DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and Thra

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_112396.2 Gene:Thra / 81812 RGDID:3857 Length:492 Species:Rattus norvegicus


Alignment Length:547 Identity:126/547 - (23%)
Similarity:211/547 - (38%) Gaps:216/547 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   344 SSNGSSNNNNG-----VSSKSFVP--------CKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQI 395
            |.:|.....||     .|...::|        |.||||||:||||...:||||||||||:|||.:
  Rat    21 SPDGKRKRKNGQCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNL 85

  Fly   396 E--YRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSRELNGAAASSAAAGAP 458
            .  |.|..|..|::.::.||:||.||||||::.||:.|.|                         
  Rat    86 HPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLV------------------------- 125

  Fly   459 ASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQHHQLQQQPHVSGVRVKTPSTPQTP 523
                :|||          ::..::.|::|.::::.:.::.:  .|||:|.               
  Rat   126 ----LDDS----------KRVAKRKLIEQNRERRRKEEMIR--SLQQRPE--------------- 159

  Fly   524 QMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSVGVVVVGGHQQLVGGSMVGMAGMGT 588
                  .:|.|                                                      
  Rat   160 ------PTPEE------------------------------------------------------ 164

  Fly   589 DAHQVGMCHDGLAGTANELTVYDVIMCVSQAHR---LNCSYTEE----LTRELMRRPVTVPQNGI 646
                                 :|:|...::|||   ...|:.::    |..::.:.|:....:|.
  Rat   165 ---------------------WDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGD 208

  Fly   647 ASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVW-LTHV 710
            ...:....||.||         :||.:.|:|:|||::|.|.:...:||:||:|....|:. |...
  Rat   209 KVDLEAFSEFTKI---------ITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 264

  Fly   711 ARLINEA-TLTLDDGAYLTRQQLE-----ILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVL 769
            .|...|: ||||.....:.|:||:     ::.|     |:.....:|:|:.|.|||:.|..|::|
  Rat   265 VRYDPESDTLTLSGEMAVKREQLKNGGLGVVSD-----AIFELGKSLSAFNLDDTEVALLQAVLL 324

  Fly   770 LASDRAGL--------SE----------------------PKVIGRARELVAEAL-RVQILRSRA 803
            :::||:||        |:                      ||::.:.||:.:..| :......|.
  Rat   325 MSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQSSILYKGAAAEGRP 389

  Fly   804 GS-----PQALQLMPALEAKIPELRSL 825
            |.     |:..||:.....:.|::|.|
  Rat   390 GGSLGVHPEGQQLLGMHVVQGPQVRQL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 42/81 (52%)
NR_LBD_DmE78_like 659..854 CDD:132739 55/210 (26%)
ThraNP_112396.2 Modulating 1..52 6/30 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 4/11 (36%)
NR_DBD_TR 52..138 CDD:143519 45/124 (36%)
NR_LBD_TR 162..370 CDD:132733 58/296 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..492
Blue background indicates that the domain is not in the aligned region.

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