DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eip78C and rorb

DIOPT Version :9

Sequence 1:NP_001246862.1 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_001076325.1 Gene:rorb / 567943 ZFINID:ZDB-GENE-061204-2 Length:466 Species:Danio rerio


Alignment Length:543 Identity:162/543 - (29%)
Similarity:240/543 - (44%) Gaps:130/543 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLS 425
            :|||:||||:||.||||.:|||||||||||.|....|.|.|...||:.|.||||||:||.:|||:
Zfish     8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLA 72

  Fly   426 AGMSRDSVRYGRVPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQ 490
            .|||||:|::||:.|:.|:               ||             :.:.|:.|..||:|:|
Zfish    73 LGMSRDAVKFGRMSKKQRD---------------SL-------------YAEVQKHQQRLQEQRQ 109

  Fly   491 QQHQPQLQQHHQLQQQPHVSGVRVKTPSTPQTPQMCSIASSPSELGGCNSANNNNNNNNNSSSGN 555
            ||                          |.:...:..:.||        |..|..:..|:...|.
Zfish   110 QQ--------------------------TGEAEALARVYSS--------SLTNGLSTLNHEIGGT 140

  Fly   556 ASGGSGVSVGVVVVGGHQQLVGGSMVGMAGMGTDAHQVGMCHDGLAGTANELTVYD--------- 611
            .:.|..:.    :..|......|...||........|.|:...|:.....| .:||         
Zfish   141 YANGHVID----MPKGQANGAPGGYYGMDSTQASPDQSGLDITGMKQIKQE-PIYDLTPVPNLFT 200

  Fly   612 --------------------VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGIASTVAESLEF 656
                                :...:.::|...|.||.|..::|             :....|.|.
Zfish   201 YGSYQDSQLAPGVSMGELDRIAQNIIKSHLETCQYTAEELQQL-------------AWQTHSYEE 252

  Fly   657 QKIW-------LWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLI 714
            .|::       ||||.:.:||..:|.:||||||:.||.:..|:||::|:|.|..||.|..:.|..
Zfish   253 VKMYQSKTRDVLWQQCAIQVTHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAF 317

  Fly   715 NEATLT-LDDGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLS 778
            |....| |.:|.|...|..:.|...|.|:|:.:||.:|.:..|::.||.||||.||:::||..|.
Zfish   318 NPLNNTVLFEGKYGGMQIFKTLGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLISTDRPWLM 382

  Fly   779 EPKVIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHL---DWLRMNW 840
            ||:.:.:.:|.:..||: .|::.......||   ..|.::||.|.:|...|...|   ..|....
Zfish   383 EPRKVQKLQEKIYFALQ-HIMQKNHLDEDAL---AKLISRIPTLSALCTLHTEELQAFQQLHPET 443

  Fly   841 TKLRLPPLFAEIFD------IPK 857
            ..:..|||:.|:|:      :||
Zfish   444 VNMLFPPLYKELFNPDAAAVMPK 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_001246862.1 NR_DBD_DmE78_like 363..443 CDD:143539 50/79 (63%)
NR_LBD_DmE78_like 659..854 CDD:132739 70/205 (34%)
rorbNP_001076325.1 NR_DBD_ROR 3..97 CDD:143526 54/116 (47%)
NR_LBD_ROR_like 217..456 CDD:132737 79/255 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001077
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45805
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X649
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.010

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