DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and rarab

DIOPT Version :9

Sequence 1:NP_001246862.1 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:XP_005164086.1 Gene:rarab / 555364 ZFINID:ZDB-GENE-980526-72 Length:460 Species:Danio rerio


Alignment Length:498 Identity:129/498 - (25%)
Similarity:193/498 - (38%) Gaps:170/498 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 FVPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL 424
            :.||.||.||:|||||||::||||||||||||||.:.|.|.|:..|::.::.||||||||.:|||
Zfish    82 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKSCIINKVTRNRCQYCRLQKCL 146

  Fly   425 SAGMSRDSVRYGRVPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQ 489
            ..|||::|||..| .||.:                    ||.....|         :.::|....
Zfish   147 EVGMSKESVRNDR-NKRKK--------------------DDKKQECL---------ENYVLSPDT 181

  Fly   490 QQQHQPQLQQHHQLQQQPHVSGVRVKTPSTPQT-PQMCSIASSPSELGGCNSANNNNNNNNNSSS 553
            ::..: |:::.||                  :| |.:|       :||        ....|||:.
Zfish   182 EKMIE-QVRKAHQ------------------ETFPSLC-------QLG--------KYTTNNSAD 212

  Fly   554 GNASGGSGVSVGVVVVGGHQQLVGGSMVGMAGMGTDAHQVGMCHDGLAGTANELTVYDVIMCVSQ 618
                                                 |:|.:..|                    
Zfish   213 -------------------------------------HRVALDVD-------------------- 220

  Fly   619 AHRLNCSYTEELTRELMRRPVTVPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKRV 683
                                                      ||.:||...|..:.:.|||||::
Zfish   221 ------------------------------------------LWDKFSELSTKCIIKTVEFAKQL 243

  Fly   684 PGFCDFTQDDQLILIKLGFFEVWLTHVARLI--NEATLTLDDGAYLTRQQLEILYDSDFVNALLN 746
            |||...|..||:.|:|....::.:..:....  ::.|:|..||..|.|.|:.........:.:..
Zfish   244 PGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA 308

  Fly   747 FANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQL 811
            |||.|....:.|.|.||.||:.||..||..|.:...:...:|.:.|||::.:...|...|   .:
Zfish   309 FANQLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIYVRNRRPHKP---HM 370

  Fly   812 MPALEAKIPELRSLGAKHFSHLDWLRMNWTKLRLPPLFAEIFD 854
            .|.:..||.:|||:.||....:..|:|. ....:|||..|:.:
Zfish   371 FPKMLMKITDLRSISAKGAERVITLKME-IPGSMPPLIQEMLE 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_001246862.1 NR_DBD_DmE78_like 363..443 CDD:143539 50/79 (63%)
NR_LBD_DmE78_like 659..854 CDD:132739 60/196 (31%)
rarabXP_005164086.1 NR_DBD_RAR 80..155 CDD:143522 45/72 (63%)
NR_LBD_RAR 184..413 CDD:132735 74/366 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2459
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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