DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and nr1d2a

DIOPT Version :9

Sequence 1:NP_001246862.1 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_001124064.2 Gene:nr1d2a / 402815 ZFINID:ZDB-GENE-040504-1 Length:504 Species:Danio rerio


Alignment Length:603 Identity:180/603 - (29%)
Similarity:266/603 - (44%) Gaps:131/603 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 SSAAHSSPDSGCSSASSSGSSRSCGSSSASSSSSAVSSTISSGRSSNNSVVNPAATSSSVAHLNK 306
            ||::.|||:| |.|.||:..|.|......:.:|.|...:||:|                      
Zfish    15 SSSSASSPES-CMSDSSASQSPSSSPPLPTKASRATDLSISAG---------------------- 56

  Fly   307 EQQQQPLPTTQLQQQQQHQQQLQHPQQQQSFGLADSSSSNGSS-NNNNGVSSKSFVPCKVCGDKA 370
                                .|:|.:...|    |.|.:|.|| ...||:    .:.||||||.|
Zfish    57 --------------------MLKHTRGHTS----DKSLANKSSITKLNGM----VLLCKVCGDVA 93

  Fly   371 SGYHYGVTSCEGCKGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVR 434
            ||:||||.:|||||||||||||:.|:| :||:...|.::|:||||||.||||||||.|||||:||
Zfish    94 SGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKTESCTIVRINRNRCQQCRFKKCLSVGMSRDAVR 158

  Fly   435 YGRVPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQ 499
            :||:|||                                     ::|:.||:.|....:   :..
Zfish   159 FGRIPKR-------------------------------------EKQRMLLEMQTAMNN---MMN 183

  Fly   500 HHQLQQQPHVSGVRVKTPSTPQTPQMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSV 564
            :.|||...|||.....:.|:...|.  |..||...|...::|     ::.:|.||...|....|.
Zfish   184 NSQLQHMLHVSPSDSSSSSSASPPD--SPRSSTESLVPMDTA-----SSCSSDSGEEDGRFSYSA 241

  Fly   565 GVVVVGGHQQLVGGSMVGMAGMGTDAHQVGM-------CHDGLAGTANELTVYDVIMCVSQAHRL 622
            .|            |......:..:..:..|       |.: ..|...|.|....|...::    
Zfish   242 SV------------SPAASETLSREEEEPQMQCWRRSDCQN-TTGPYREQTAQQCIRLPTE---- 289

  Fly   623 NCSYTEELTRELMRRPVTVPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKRVPGFC 687
            |.||......|...|...|.....:..|..|....::  |::||....|.|:.:||||||:|||.
Zfish   290 NMSYCRRNMNEGGNRAHLVCPMSASPFVDASRPGHEV--WEEFSRSFIPAVREVVEFAKRIPGFQ 352

  Fly   688 DFTQDDQLILIKLGFFEVWLTHVARL--INEATLTLDDGAYLTRQQLEILYDSDFVNALLNFANT 750
            :.:|.||:.|:|.|.|||.:.....|  :.:.|::...|...:...|..:...:.:|.:..|:..
Zfish   353 ELSQHDQVNLLKAGTFEVLMVRFVPLFDVQQRTVSFMSGRRYSVDLLRSMGAGELLNCMFEFSEK 417

  Fly   751 LNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQLMPAL 815
            |.|..|:|.|:.||||:||:::||:.:.:...:...:|.:..|||..|:::.:...   .:...|
Zfish   418 LAALQLNDEEMSLFSAVVLVSADRSAIEDVVGVEALQESLIRALRNLIMKNHSNES---SVFTKL 479

  Fly   816 EAKIPELRSLGAKHFSHL 833
            ..|:||||||...|...|
Zfish   480 LLKLPELRSLNNMHSEEL 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_001246862.1 NR_DBD_DmE78_like 363..443 CDD:143539 58/80 (73%)
NR_LBD_DmE78_like 659..854 CDD:132739 57/177 (32%)
nr1d2aNP_001124064.2 NR_DBD_REV_ERB 81..169 CDD:143540 59/128 (46%)
NR_LBD 314..502 CDD:299703 59/189 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4846
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 232 1.000 Inparanoid score I3402
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45805
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.960

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