DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and rarga

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:XP_068072765.2 Gene:rarga / 30606 ZFINID:ZDB-GENE-980526-531 Length:514 Species:Danio rerio


Alignment Length:543 Identity:134/543 - (24%)
Similarity:199/543 - (36%) Gaps:177/543 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 PQQQQSFGLADSSSSNGS---SNNNNGVSSKSFVPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQ 392
            |::..:..:...|:|:..   |:.:.....:.:.||.||.||:|||||||:||||||||||||||
Zfish    50 PKEMAALSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQ 114

  Fly   393 KQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMS-------RDSVRYGRVPKRSRELNGAAA 450
            |.:.|.|.||..|.:.::.||||||||.:||...|||       :::||..|..|:.        
Zfish   115 KNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEEGNKPKETVRNDRNKKKK-------- 171

  Fly   451 SSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQHHQLQQQPHVSGVRVK 515
                          |.....:.|...:...:...|..:..:.||...                  
Zfish   172 --------------DVKDEVIPPESYELSGELEELVNKVSKAHQETF------------------ 204

  Fly   516 TPSTPQTPQMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSVGVVVVGGHQQLVGGSM 580
                   |.:|       :||         ....||||.                          
Zfish   205 -------PSLC-------QLG---------KYTTNSSSD-------------------------- 220

  Fly   581 VGMAGMGTDAHQVGMCHDGLAGTANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNG 645
                                                   ||:...                    
Zfish   221 ---------------------------------------HRIQLD-------------------- 226

  Fly   646 IASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHV 710
                         :.||.:||...|..:.:|||||||:|||...|..||:.|:|....::.:..:
Zfish   227 -------------LGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRI 278

  Fly   711 ARLI--NEATLTLDDGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASD 773
            ....  .:.|:|..||..|.|.|:.........:.:..||..|....:.|||.||.||:.|:..|
Zfish   279 CTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 343

  Fly   774 RAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRM 838
            |..|.||:.:.|.:|.:.|||::...|.|...|   .:.|.:..||.:||.:..|.......|:|
Zfish   344 RMDLEEPERVDRLQEPLLEALKIYARRRRPNKP---HMFPRMLMKITDLRGISTKGAERAITLKM 405

  Fly   839 NWTKLRLPPLFAEIFDIPKADDE 861
            . ....:|||..|:.:.|:|.::
Zfish   406 E-IPGPMPPLIREMLENPEAFED 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 49/86 (57%)
NR_LBD_DmE78_like 659..854 CDD:132739 63/196 (32%)
rargaXP_068072765.2 None

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