DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eip78C and Rora

DIOPT Version :9

Sequence 1:NP_001246862.1 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:XP_038938751.1 Gene:Rora / 300807 RGDID:1308419 Length:523 Species:Rattus norvegicus


Alignment Length:630 Identity:163/630 - (25%)
Similarity:266/630 - (42%) Gaps:141/630 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 AAHSSPDSGCSSASSSGSSRSCGSSSASSSSSAVSSTISSGRSSNNSVVNPAATSSSVAHLNKEQ 308
            :|.::||...|...||||..:.||..                                       
  Rat     3 SAPAAPDPAASEPGSSGSEAAAGSRE--------------------------------------- 28

  Fly   309 QQQPLPTTQLQQQQQHQQQLQHPQQQQSFGLADSSSSNG-SSNNNNGVSSKSFVPCKVCGDKASG 372
                   |.|.|....:.:.....::||:    :|||.| |.......|....:|||:||||:||
  Rat    29 -------TPLTQDAGRKSEAPGAGRRQSY----ASSSRGISVTKKTHTSQIEIIPCKICGDKSSG 82

  Fly   373 YHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGR 437
            .||||.:|||||||||||.|....|.|.|...||:.|.:|||||:||.:|||:.|||||:|::||
  Rat    83 IHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 147

  Fly   438 VPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQHHQ 502
            :.|:.|:                              .|..:.|:|.:||||:..          
  Rat   148 MSKKQRD------------------------------SLYAEVQKHRMQQQQRDH---------- 172

  Fly   503 LQQQPHVSGVRVKTPSTPQTPQMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSVGVV 567
             ||||        ..:.|.||.....|:..:||....|...:.:....|.:.:|.....:.:   
  Rat   173 -QQQP--------GEAEPLTPTYNISANGLTELHDDLSTYMDGHTPEGSKADSAVSSFYLDI--- 225

  Fly   568 VVGGHQQLVGGSMVGMAGMGTDAHQVGMC---------------HDGLAGTANELTVYDVIMCVS 617
                 |.....|.:.:.|:..:.    :|               :...:.|.:...:..:...:|
  Rat   226 -----QPSPDQSGLDINGIKPEP----ICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNIS 281

  Fly   618 QAHRLNCSYTEELTRELMRRPVTVPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR 682
            ::|...|.|..|..:::      ..|..:...:......|:..:||..:.::|..:|.:||||||
  Rat   282 KSHLETCQYLREELQQI------TWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKR 340

  Fly   683 VPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTL-DDGAYLTRQQLEILYDSDFVNALLN 746
            :.||.:..|:||::|:|.|..||....:.|..:....|: .||.|.:....:.|...||::.:..
  Rat   341 IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFE 405

  Fly   747 FANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQL 811
            |..:|.:..|::.||.||||.||:::||:.|.|...|.:.::.:..||:..:.::....    .:
  Rat   406 FGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED----GI 466

  Fly   812 MPALEAKIPELRSLGAKHFSHLDWLRMNW---TKLRLPPLFAEIF 853
            :..|..|:..||:|..:|...|...:..:   .:|..|||:.|:|
  Rat   467 LTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_001246862.1 NR_DBD_DmE78_like 363..443 CDD:143539 49/79 (62%)
NR_LBD_DmE78_like 659..854 CDD:132739 59/199 (30%)
RoraXP_038938751.1 NR_DBD_ROR 66..160 CDD:143526 53/123 (43%)
NR_LBD_ROR_like 272..511 CDD:132737 65/248 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001077
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45805
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X649
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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