DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and Rora

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_001414296.1 Gene:Rora / 300807 RGDID:1308419 Length:523 Species:Rattus norvegicus


Alignment Length:630 Identity:163/630 - (25%)
Similarity:266/630 - (42%) Gaps:141/630 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 AAHSSPDSGCSSASSSGSSRSCGSSSASSSSSAVSSTISSGRSSNNSVVNPAATSSSVAHLNKEQ 308
            :|.::||...|...||||..:.||..                                       
  Rat     3 SAPAAPDPAASEPGSSGSEAAAGSRE--------------------------------------- 28

  Fly   309 QQQPLPTTQLQQQQQHQQQLQHPQQQQSFGLADSSSSNG-SSNNNNGVSSKSFVPCKVCGDKASG 372
                   |.|.|....:.:.....::||:    :|||.| |.......|....:|||:||||:||
  Rat    29 -------TPLTQDAGRKSEAPGAGRRQSY----ASSSRGISVTKKTHTSQIEIIPCKICGDKSSG 82

  Fly   373 YHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGR 437
            .||||.:|||||||||||.|....|.|.|...||:.|.:|||||:||.:|||:.|||||:|::||
  Rat    83 IHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 147

  Fly   438 VPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQHHQ 502
            :.|:.|:                              .|..:.|:|.:||||:..          
  Rat   148 MSKKQRD------------------------------SLYAEVQKHRMQQQQRDH---------- 172

  Fly   503 LQQQPHVSGVRVKTPSTPQTPQMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSVGVV 567
             ||||        ..:.|.||.....|:..:||....|...:.:....|.:.:|.....:.:   
  Rat   173 -QQQP--------GEAEPLTPTYNISANGLTELHDDLSTYMDGHTPEGSKADSAVSSFYLDI--- 225

  Fly   568 VVGGHQQLVGGSMVGMAGMGTDAHQVGMC---------------HDGLAGTANELTVYDVIMCVS 617
                 |.....|.:.:.|:..:.    :|               :...:.|.:...:..:...:|
  Rat   226 -----QPSPDQSGLDINGIKPEP----ICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNIS 281

  Fly   618 QAHRLNCSYTEELTRELMRRPVTVPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR 682
            ::|...|.|..|..:::      ..|..:...:......|:..:||..:.::|..:|.:||||||
  Rat   282 KSHLETCQYLREELQQI------TWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKR 340

  Fly   683 VPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTL-DDGAYLTRQQLEILYDSDFVNALLN 746
            :.||.:..|:||::|:|.|..||....:.|..:....|: .||.|.:....:.|...||::.:..
  Rat   341 IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFE 405

  Fly   747 FANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQL 811
            |..:|.:..|::.||.||||.||:::||:.|.|...|.:.::.:..||:..:.::....    .:
  Rat   406 FGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED----GI 466

  Fly   812 MPALEAKIPELRSLGAKHFSHLDWLRMNW---TKLRLPPLFAEIF 853
            :..|..|:..||:|..:|...|...:..:   .:|..|||:.|:|
  Rat   467 LTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 49/79 (62%)
NR_LBD_DmE78_like 659..854 CDD:132739 59/199 (30%)
RoraNP_001414296.1 None

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