DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and nhr-175

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_506438.2 Gene:nhr-175 / 184255 WormBaseID:WBGene00008630 Length:374 Species:Caenorhabditis elegans


Alignment Length:156 Identity:45/156 - (28%)
Similarity:73/156 - (46%) Gaps:25/156 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 CKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAG 427
            |.||||:......|..:|.||..||||:|....:|:||:||.||:....|:.|:.||.:|||..|
 Worm    33 CAVCGDRVHSVRLGSPACLGCIVFFRRAIINVSKYKCLKDGDCLINYEFRSSCRACRLQKCLQVG 97

  Fly   428 MSRDSVRYGRVPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQ 492
            |.:.:|       :.|:..|          |..:....:.|:   |..:|::.:.:::|...:.|
 Worm    98 MKQSAV-------KRRDCLG----------PRKVTPPTAAST---PPVVQRKPESYIIQNLVKIQ 142

  Fly   493 HQPQLQQHHQLQQQPHVSGVRVKTPS 518
                 .:|.:..:...||..|..|.|
 Worm   143 -----DRHFEEHRDQSVSEFRRATVS 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 31/79 (39%)
NR_LBD_DmE78_like 659..854 CDD:132739
nhr-175NP_506438.2 NR_DBD_HNF4A 33..107 CDD:143518 31/80 (39%)
Hormone_recep 151..346 CDD:459675 5/13 (38%)
Blue background indicates that the domain is not in the aligned region.

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