DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and nhr-150

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_506854.1 Gene:nhr-150 / 182297 WormBaseID:WBGene00007367 Length:342 Species:Caenorhabditis elegans


Alignment Length:119 Identity:34/119 - (28%)
Similarity:57/119 - (47%) Gaps:8/119 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 CKVCGDKASGYHYGVTSCEGCKGFFRR-SIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSA 426
            |:|||...:..|:|..||..|..|||| .:.|:...:|    .|....|:.:.|:.||..||..|
 Worm     2 CQVCGAAEADLHFGGISCRACAAFFRRFFLSKKQSKKC----TCKTRILDSHPCRSCRILKCFEA 62

  Fly   427 GMSRDSVRYGRVPKRSRELNGAAASSAAAGAPASLNVDDSTSSTLHPS-HLQQQ 479
            ||:...::.||....::.:  :..|:.:.....|..:...:|..:|.: ||.|:
 Worm    63 GMTSKKIQSGRDKTSTKAI--SCISTESTSNSLSARIIPRSSLNIHGAVHLWQE 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 27/80 (34%)
NR_LBD_DmE78_like 659..854 CDD:132739
nhr-150NP_506854.1 ZnF_C4 2..65 CDD:197701 24/66 (36%)
HOLI 139..310 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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