DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip78C and nhr-15

DIOPT Version :10

Sequence 1:NP_524195.2 Gene:Eip78C / 40345 FlyBaseID:FBgn0004865 Length:862 Species:Drosophila melanogaster
Sequence 2:NP_001379919.1 Gene:nhr-15 / 178558 WormBaseID:WBGene00003614 Length:371 Species:Caenorhabditis elegans


Alignment Length:151 Identity:51/151 - (33%)
Similarity:68/151 - (45%) Gaps:29/151 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 SSSSNGSSNNNNGVSSK--SFVPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRC----- 399
            ||||:||........|:  |...|.:||:.|..|:|||.||..||.||||....:|.|.|     
 Worm    10 SSSSSGSPVEFKPDKSQLNSSEKCAICGNLAFCYNYGVLSCNACKMFFRRVEVDRITYHCKYWDR 74

  Fly   400 LRDGKCLV-IRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSRELNGAAASSAAAGAPASLN- 462
            ..||:..| ::....||:.||:::||..||     :|....|...||               || 
 Worm    75 CYDGQEFVNVKKFSKRCRACRYQRCLQVGM-----KYICPGKLELEL---------------LNR 119

  Fly   463 VDDSTSSTLHPSHLQQQQQQH 483
            |||.|.|.:....|....::|
 Worm   120 VDDETCSLIKTLLLMDSNRRH 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip78CNP_524195.2 NR_DBD_DmE78_like 363..443 CDD:143539 32/85 (38%)
NR_LBD_DmE78_like 659..854 CDD:132739
nhr-15NP_001379919.1 ZnF_C4 32..105 CDD:197701 30/77 (39%)
HOLI 182..340 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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