Protein Alignment Eip78C and rarb

DIOPT Version :10

• Sequence 1: NP_524195.2
• Gene: Eip78C / 40345
• FlyBaseID: FBgn0004865
• Length: 862
• Species: Drosophila melanogaster
• Sequence 2: XP_002932450.2
• Gene: rarb / 100488600
• XenbaseID: XB-GENE-481009
• Length: 447
• Species: Xenopus tropicalis
• Alignment Length: 541
• Identity: 137/541 - (25%)
• Similarity: 204/541 - (37%)
• Gaps: 177/541 - (32%)

  Fly   317 QLQQQQQHQQQLQHPQQQQSFGLADSSSSNGSSNNNNGVSSKSFVPCKVCGDKASGYHYGVTSCE 381
            |...|.:|..|....|...|..|..|..|...       ..:.:.||.||.||:|||||||::||
 Frog    42 QTDWQHRHSAQSIETQSTSSEDLVPSPPSPPP-------PPRIYKPCFVCQDKSSGYHYGVSACE 99

  Fly   382 GCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSRELN 446
            ||||||||||||.:.|.|.|:..|::.::.||||||||.::|...|||::|||..|..|:..
 Frog   100 GCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDRNKKKKE--- 161

  Fly   447 GAAASSAAAGAPASLNVDDSTSSTLHPSHLQQQQQQHLLQQQQQQQHQPQLQQHHQLQQQPHVSG 511
                       |:.:...::...|.....|.:                 ::::.||
 Frog   162 -----------PSKIECIENYEMTAELDDLTE-----------------KIRKAHQ--------- 189

  Fly   512 VRVKTPSTPQT-PQMCSIASSPSELGGCNSANNNNNNNNNSSSGNASGGSGVSVGVVVVGGHQQL 575
                     :| |.:|       :||         ....|||:
 Frog   190 ---------ETFPSLC-------QLG---------KYTTNSSA---------------------- 207

  Fly   576 VGGSMVGMAGMGTDAHQVGMCHDGLAGTANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVT 640
                                                     .|..||:
 Frog   208 -----------------------------------------EQRVRLD----------------- 214

  Fly   641 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEV 705
                              :.||.:||...|..:.:|||||||:|||...|..||:.|:|....::
 Frog   215 ------------------LGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDI 261

  Fly   706 WLTHVARLI--NEATLTLDDGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMV 768
            .:..:....  .:.|:|..||..|.|.|:.........:.:..|||.|....:.|||.||.||:.
 Frog   262 LILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAIC 326

  Fly   769 LLASDRAGLSEPKVIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHL 833
            |:..||..|.||..:.:.:|.:.|||::.|.:.|...|   .:.|.:..||.:|||:.||....:
 Frog   327 LICEDRQDLEEPAKVDKLQEPLLEALKIYIRKRRPNKP---HMFPKILMKITDLRSISAKGAERV 388

  Fly   834 DWLRMNWTKLRLPPLFAEIFD 854
            ..|::. ....:|||..|:.:
 Frog   389 ITLKLE-IPGSMPPLIQEMLE 408

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Eip78C	NP_524195.2	NR_DBD_DmE78_like	363..443	CDD:143539	47/79 (59%)
		NR_LBD_DmE78_like	659..854	CDD:132739	64/196 (33%)
rarb	XP_002932450.2	NR_DBD_RAR	75..159	CDD:143522	47/83 (57%)
		NR_LBD_RAR	179..409	CDD:132735	78/383 (20%)