DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment park and PRKN

DIOPT Version :9

Sequence 1:NP_730600.1 Gene:park / 40336 FlyBaseID:FBgn0041100 Length:482 Species:Drosophila melanogaster
Sequence 2:XP_016866397.1 Gene:PRKN / 5071 HGNCID:8607 Length:503 Species:Homo sapiens


Alignment Length:479 Identity:203/479 - (42%)
Similarity:285/479 - (59%) Gaps:39/479 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 HTLSIYVKTNTGKTLTVNLEPQWDIKNVKELVAPQLGLQPDDLKIIFAGKELSDATTIEQCDLGQ 92
            :.::::|:.|:.....|.::....|..:||:||.:.|:..|.|::|||||||.:..|::.|||.|
Human    37 YPITVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQ 101

  Fly    93 QSVLHAIRLRPPVQRQKIQSATLEEEEPSLSDEASKPLNETLLDLQ--------------LESEE 143
            ||::|.:: ||..:.|::.:...::...:......:|.:.|.:||.              |.::.
Human   102 QSIVHIVQ-RPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDS 165

  Fly   144 RLNITDEERVRAKA------HFFVHC-SQCDKLCNGKLRVRCALCKGGAFTVHRDPECWDDVLKS 201
            |   .|.....:.|      .|:|:| ..|.::..|||||:|:.|:....|:.:.|.||||||..
Human   166 R---KDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIP 227

  Fly   202 RRIPGHCESLEVACVDNAAGDPPFAEFFFKCAEHVSGGEKDFAAPLNLIKNNIKNVPCLACTDVS 266
            .|:.|.|:|..  |...:      |||||||..|.: .:|:.:..|:||..|.:|:.|:.||||.
Human   228 NRMSGECQSPH--CPGTS------AEFFFKCGAHPT-SDKETSVALHLIATNSRNITCITCTDVR 283

  Fly   267 DTVLVFPCASQHVTCIDCFRHYCRSRLGERQFMPHPDFGYTLPCPAGCEHSFIEEIHHFKLLTRE 331
            ..||||.|.|:||.|:|||..||.:||.:|||:..|..||:|||.|||.:|.|:|:|||::|..|
Human   284 SPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEE 348

  Fly   332 EYDRYQRFATEEYVLQAGGVLCPQPGCGMGLLVEPDCRKVTCQN----GCGYVFCRNCLQGYHIG 392
            :|:|||::..||.|||.||||||:||||.|||.|||.|||||:.    |||:.|||.|.:.||.|
Human   349 QYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEG 413

  Fly   393 ECLPEGTGASATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCRTPTERDGGCMHMVCTRA 457
            || .....||.|.:..|.||...|.:|||:.||..|||.:|||||:|..|.|::||||||.|.:.
Human   414 EC-SAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQP 477

  Fly   458 GCGFEWCWVCQTEWTRDCMGAHWF 481
            .|..||||.|..||.|.|||.|||
Human   478 QCRLEWCWNCGCEWNRVCMGDHWF 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
parkNP_730600.1 UBQ 30..97 CDD:214563 25/66 (38%)
parkin_N 32..101 CDD:176393 26/68 (38%)
IBR 334..390 CDD:214763 36/59 (61%)
IBR <435..471 CDD:279784 19/35 (54%)
PRKNXP_016866397.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155009
Domainoid 1 1.000 120 1.000 Domainoid score I5771
eggNOG 1 0.900 - - E1_KOG0006
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3355
Inparanoid 1 1.050 403 1.000 Inparanoid score I1922
Isobase 1 0.950 - 0 Normalized mean entropy S2577
OMA 1 1.010 - - QHG46525
OrthoDB 1 1.010 - - D1140368at2759
OrthoFinder 1 1.000 - - FOG0006338
OrthoInspector 1 1.000 - - oto90449
orthoMCL 1 0.900 - - OOG6_108992
Panther 1 1.100 - - LDO PTHR11685
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4411
SonicParanoid 1 1.000 - - X5292
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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