DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment park and Rnf19a

DIOPT Version :10

Sequence 1:NP_730600.1 Gene:park / 40336 FlyBaseID:FBgn0041100 Length:482 Species:Drosophila melanogaster
Sequence 2:NP_001124032.1 Gene:Rnf19a / 362900 RGDID:1307807 Length:840 Species:Rattus norvegicus


Alignment Length:323 Identity:79/323 - (24%)
Similarity:121/323 - (37%) Gaps:111/323 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 DDVLKSRRIPGHCESL--------EVACVD-------NAAGDPPFAEF------FFKCAEHVSGG 239
            |:..|||.:.|..:.:        || |.:       ||:.|......      |.:|       
  Rat    76 DNKRKSRELTGGVDGIASIESIRSEV-CAEKNSIFSTNASSDNGLTSISKQIGDFIEC------- 132

  Fly   240 EKDFAAPLNLIKNNIKNVP-CLACTDVSDTVLVFPCASQHVTCIDCFRHYCRSRLGERQFMPHPD 303
                  ||.|::::....| .:.|              .|.:|:||.|.|.|..:.|.:      
  Rat   133 ------PLCLLRHSKDRFPDIMTC--------------HHRSCVDCLRQYLRIEISESR------ 171

  Fly   304 FGYTLPCPAGCEHSFIEEIHHFKLLTREE--YDRYQRFATEEY-VLQAGGVLCPQPGCGMGLLVE 365
              ..:.||. |...|  ..|..:|:..::  .::|:.|....: |.......||.|.||..::..
  Rat   172 --VNISCPE-CTERF--NPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAF 231

  Fly   366 --PDCRKVTC-QNGCGYVFCRNCLQGYHIGECLPEGTGASATNSCEYTVDPNRAAE-ARWDEASN 426
              ..|.|:|| :.|||..||.:|.|.:|                      ||:..: ||.:.|.:
  Rat   232 GCASCPKLTCGREGCGTEFCYHCKQIWH----------------------PNQTCDAARQERAQS 274

  Fly   427 V---TIKVST--------------KPCPKCRTPTER--DGGCMHMVCTRAGCGFEWCWVCQTE 470
            :   ||:.|:              ||||:|.....:  ||.|.||.|  |.||.|:||:|..|
  Rat   275 LRLRTIRSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFCWLCMKE 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
parkNP_730600.1 Ubl_parkin 32..105 CDD:340496
RING0_parkin 159..250 CDD:412057 15/74 (20%)
zf-RING_14 249..337 CDD:465601 17/90 (19%)
BRcat_RBR_parkin 322..398 CDD:439001 22/81 (27%)
Rcat_RBR_parkin 428..481 CDD:439018 22/59 (37%)
Rnf19aNP_001124032.1 RING-HC_RBR_RNF19A 130..185 CDD:438431 18/92 (20%)
BRcat_RBR_RNF19A 191..273 CDD:439023 24/103 (23%)
Rcat_RBR_RNF19 295..363 CDD:439016 19/43 (44%)
ser_rich_anae_1 432..>661 CDD:468206
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.