DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42337 and Arid2

DIOPT Version :9

Sequence 1:NP_001246858.1 Gene:CG42337 / 40335 FlyBaseID:FBgn0259239 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_780460.3 Gene:Arid2 / 77044 MGIID:1924294 Length:1828 Species:Mus musculus


Alignment Length:548 Identity:116/548 - (21%)
Similarity:177/548 - (32%) Gaps:176/548 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PASFYDQHHSHHHPQHLTPTMSHYPPQPYRSGYTGYHTYGYGYGSSSSASYMPNYYRYAPYASPH 70
            |...|.|......|......::...|.|..:|..        :|..::.    |:::..|..:..
Mouse   607 PIQMYYQQQPISTPVVRVDAVADLSPTPSPAGIP--------HGPQAAG----NHFQRTPVTNQS 659

  Fly    71 YSQHHQGMFTPA-GQQIIPSSVLHYPPRP--HPYQQ------LPQQQQPHP---------QQSQP 117
            .:.....|..|. |...:..:|...||.|  |.:||      :.|.:.|.|         |.|.|
Mouse   660 SNLTATQMSFPVQGIHTVAQTVSRIPPNPSVHTHQQQNSPVTVIQNKAPIPCEVVKATVIQNSVP 724

  Fly   118 GYEPPPPLPYSSSASYQSRGFGAFAGPTP----------HYAPPGRSSTPAPNRTVLP---PS-- 167
            ....|..:....:.:..|.|....|||.|          |:  |.....|:|..||:|   ||  
Mouse   725 QTAVPVSISVGGAPAQNSVGQNHSAGPQPVTVVNSQTLLHH--PSVMPQPSPLHTVVPGQVPSGT 787

  Fly   168 -------------YLEPLRSYSAEQQHLSQQQHL--SQQQLQHHPLPGTPKLEDPDVEVEAVAES 217
                         ....::|..|....:||.|.|  :..|..|.....|.....|.   :.|..:
Mouse   788 PVTVIQQTVPQSRMFGRVQSIPACTSTVSQGQQLITTSPQPMHTSSQQTAAGSQPQ---DTVIIA 849

  Fly   218 PAQRLTTSPP-MISATGTDS----------------------GISNCS-----TRARSDSSQSTP 254
            |.|.:|||.. ::|||...:                      |..|.:     ::..|.|....|
Mouse   850 PPQYVTTSASNIVSATSVQNFQVATGQVVTIAGVPSPQPSRVGFQNIAPKPLPSQQVSPSVVQQP 914

  Fly   255 VYSGEYPVNMSVESASCVPYHCPADARDYEEEEHQPPVTAEVRRADTPLDITDDISATSPVAADE 319
            :...:.|...||...|                  ||   |:..:|..|  ....|...:|.|   
Mouse   915 IQQPQQPAQQSVVIVS------------------QP---AQQGQAYAP--AIHQIVLANPAA--- 953

  Fly   320 VKPTAPTSSQVAKSAETNLQPDSAASLDVPTTPQDTSGDPITEAADERPEHARQQQHPVTNNWSP 384
                .|....|..:.:.|:.|.|:.|             |:                |.|||..|
Mouse   954 ----LPAGQTVQLTGQPNITPSSSPS-------------PV----------------PPTNNQVP 985

  Fly   385 TTRRPRTPPAPQNSPIGFGQNASVPPALAHLL----QQQQQ-------QQLQLQQQQQQQ---QV 435
            |.       ...:|.:   |:...||.::.:|    |||||       ||:|:|.||.||   ||
Mouse   986 TA-------MSSSSTL---QSQGPPPTVSQMLSVKRQQQQQHSPAAPAQQVQVQVQQPQQVQVQV 1040

  Fly   436 GNLKRCATSGKNRSSHNRIIECDLIPSK 463
            ...:..|..|:...:.:.:|:..|:|.:
Mouse  1041 QPQQPSAGVGQPAPNESSLIKQLLLPKR 1068

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42337NP_001246858.1 None
Arid2NP_780460.3 ARID 19..101 CDD:307514
LXXLL. /evidence=ECO:0000250|UniProtKB:Q68CP9 313..317
RFX_DNA_binding 521..601 CDD:308073
Atrophin-1 603..>910 CDD:331285 64/319 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 824..843 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 962..1028 23/104 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1245..1339
Sec23_BS 1278..>1575 CDD:331630
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1360..1462
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1483..1503
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1566..1618
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1697..1726
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.