DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ko and Stox2

DIOPT Version :9

Sequence 1:NP_001262135.1 Gene:ko / 40330 FlyBaseID:FBgn0020294 Length:1049 Species:Drosophila melanogaster
Sequence 2:XP_017455603.1 Gene:Stox2 / 306459 RGDID:708477 Length:994 Species:Rattus norvegicus


Alignment Length:1170 Identity:258/1170 - (22%)
Similarity:400/1170 - (34%) Gaps:344/1170 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PGGPQRCRLILQRCLAIQL--------TKPG---------HTPEDFWMYDSGYMIFQNFLAANAQ 53
            ||..::...|....|||.|        .|||         ..|.....:..||.||.:|.|.|.|
  Rat     2 PGKMEKFLQIAPHSLAIVLGPADCPAEEKPGTIQPSPQVPTQPRQLARHHIGYEIFADFKAENMQ 66

  Fly    54 CWWNGPLTAATRALKYAGHVAPGMLLVTAEPCALEVLRGAFARSVLKPPATYVISSVGDIDDCIV 118
            .:||..:|||.....:.|.:...:||:..:...||.||..:.|..|:||:.:.|..:||:....:
  Rat    67 HFWNKKVTAAVAETFFLGWIDEQVLLIQGKEEHLEALREGWTRRALRPPSGFQIRCLGDVSPISM 131

  Fly   119 TPTVQGQFTPLPEALCDVIMDLTAEGQSATIEHVRSKLGSRFPHMTTPATEVIYDSLAQLMQEQK 183
            :|..|.||.||.|.||..|..:.:..:..|.|.:...|.:.||.:.||:.|::..:|..|::|:|
  Rat   132 SPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERK 196

  Fly   184 IYQTSKGYFIFTPERRRSRSRPRSNHHQLNGSLAYGHLAEEEQQHGDDVVPQEARTMLMSNSEAL 248
            ||.|..||||.||:                   .|            .:.|...||    ||:..
  Rat   197 IYPTPDGYFIVTPQ-------------------TY------------FITPSLIRT----NSKWY 226

  Fly   249 HSLYGEISTERDGDLTHQCIQTNLADVICGGNPNDKIIYPRAAKRRSASFPTPRSLERRHSLRLF 313
            |      ..||..|.: ||.           :|....|.|.|     :.....|:|.|:|     
  Rat   227 H------LDERVPDRS-QCT-----------SPQPGTITPSA-----SGCVRERTLPRKH----- 263

  Fly   314 GSSKRLQRCASTR-SLSKTYAQTLN--------------------TTDSSSS----EYQSTDSSS 353
                 ...|...| .:...:|.||.                    .||.|.|    .|::...|.
  Rat   264 -----CDSCHCCREDMHSMHASTLQRKPAKDCKDPYCPPPLCQVPPTDKSKSTINFSYKTETLSK 323

  Fly   354 PKKGSLLS-----RLFRRS-GRAKQRQIETYSAQFPPAEW------------------------- 387
            ||.|...|     :|||.| .:.|.:|:..:||||||.||                         
  Rat   324 PKDGEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINP 388

  Fly   388 -FNTRAVHLHSVGTQTAEHDMPVAHTLSNSTFYDGSELSQRSSTLPRRHRRHMSSESTFLISSRD 451
             .....|..|:...:..|.:........:|..:.|.  |::|.|..:.|.:..|...| .:|..|
  Rat   389 DLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGR--SKKSRTHRKSHGKSRSHSKT-RVSKGD 450

  Fly   452 -----------------CSPIRRRSPVYCSSSLPRSTQSIPATTAKTNHSSRLSHGHGGSVTPTP 499
                             |.|:.|         .||....|    .:....:.:.|.:...:....
  Rat   451 PSDGSHLDIPGEREYEFCDPLTR---------APREGCFI----IEHKGDNFIMHSNTNVIESHF 502

  Fly   500 PKTAQKSVIG---KHIFE---SSPSR-SATLKATAAKRHTDGLIINSCLDNKATYRSL---QSSG 554
            |.|.:..|.|   |...|   ..||| |:..|...:..||......:...|||..||.   .|.|
  Rat   503 PMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKG 567

  Fly   555 PSSLESCKTTSMLASGPSSIDSGKVSFSQKTSGHSSLDSQCSTNTAVIAPPSNSNNGSSRSILLL 619
            |....|..|...||.|.|..|        :|:..|.:|.                     |.|  
  Rat   568 PLGASSLGTPEDLAEGCSQDD--------QTASQSYIDD---------------------STL-- 601

  Fly   620 NGSPRGTPRHQAMRARVAEAQAQRQRASTPSRIMEEI-YP--AGGSNGVPTSNSNNSITLQVTTS 681
              .|..|..|              |||..||...:|: .|  .||      |...:|....:...
  Rat   602 --RPAQTIGH--------------QRAHIPSASYKEVCIPEIVGG------SKEPSSACSLLEPG 644

  Fly   682 NGNQSIPS----------TKI---FVQNSPVRSVITLEN--GKMLENSNVFIINNETMTNEKGEI 731
            ...:|:||          |.:   |..|:...:|:|..:  ||..|       :::|:|..:|  
  Rat   645 KSPESMPSYGELSPCPAKTAVDDYFQCNTSSETVLTAPSPLGKNKE-------DHDTLTLVEG-- 700

  Fly   732 IKKTLSKQTSAAPAATSTPV-KPETVSEQPLSETEANSETCDSIS---FISECSPESTCAVEPET 792
            :|| ||......|.::..|| ..|...:.|.....|:....:.::   .:...|.|.: .::...
  Rat   701 VKK-LSPSERQTPHSSRDPVGHKEESPKGPGGGPAASGGVAEGLANGRLVQHHSAEPS-NLDKRK 763

  Fly   793 PVYDGGKYAKNTNNDATMNNSRKLCLQLANGIAYKNNVLKNESQPNSPSADAPLKMAALAKQDFE 857
            .::......|..::..::|:..|..|.|.            :|.|.||:...|   ....|.:..
  Rat   764 EIFSKDTLFKPLHSTLSVNSYHKSSLSLL------------KSHPKSPADTLP---GRCEKMEPS 813

  Fly   858 IAGSVGNLNFYEKSSKDVGASQSNNMMMNSSTDLKNLCYESVCQLQKCSMNGDELALAHLLHKSS 922
            :..|........:..::.|.:|      .:|.|..|:..:...: :..:.|.:|       .|:.
  Rat   814 LGTSAAQAMPPSQRQQEPGGNQ------EASFDYYNVSDDDDSE-EGANKNTEE-------EKNR 864

  Fly   923 NPLGSEPNLALKDLANDKSID-KEAIDRRLSLTKESLEQGMGSVLANGGEELYNFPSLTDLSFNF 986
            :.:|:...|    |..:|..| :...::.|:|            ||         |..||.|.| 
  Rat   865 DDVGTMQWL----LEREKERDLQRKFEKNLTL------------LA---------PKETDSSSN- 903

  Fly   987 TSLAARKILQGVSLNSIDT---LVELNMAAAAAAAAVANNAQ---EKQQNNQPAT------AGPT 1039
                 ::......|:|:|:   .|:....:.....::|:|..   |..:...||.      ||||
  Rat   904 -----QRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPALSPAHGGAGPT 963

  Fly  1040  1039
              Rat   964  963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
koNP_001262135.1 Stork_head 119..195 CDD:287266 29/75 (39%)
Stox2XP_017455603.1 Stork_head 131..209 CDD:402054 29/77 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352088
Domainoid 1 1.000 65 1.000 Domainoid score I9799
eggNOG 1 0.900 - - E1_KOG3897
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46192
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22437
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.890

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