DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and AT4G38200

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_195533.2 Gene:AT4G38200 / 829976 AraportID:AT4G38200 Length:1687 Species:Arabidopsis thaliana


Alignment Length:569 Identity:150/569 - (26%)
Similarity:229/569 - (40%) Gaps:163/569 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   516 SYASSADTSLNASWVN----------TSGHSPHTPYYSAAQIYMRP--KGGSTTPTPSCS----- 563
            |.|:|.|.||....||          ..|:|.|     ..|.::..  ..|...|.|..:     
plant   196 SEANSMDASLKTVNVNDLLAITDKNVNEGNSVH-----ICQGFINDVITAGEAAPPPDFALVQPP 255

  Fly   564 --GSTGSGSGGSGSGSSKKVPPE-------VPKRTSSITAQQQTQLLLLQRQTPPPPSLLRT--- 616
              |::.:...|:||    |:..:       :.|.:...::|:.|...:|.|.......||:.   
plant   256 EEGASSTEDEGTGS----KIREDGFLLFKNLCKLSMKFSSQENTDDQILVRGKTLSLELLKVIID 316

  Fly   617 NG-----------------LCKTAENGSLTSVQS-----------------SGSDS--------- 638
            ||                 ||.:....|..||.|                 ||..|         
plant   317 NGGPIWLSDERFLNAIKQLLCLSLLKNSALSVMSIFQLQCAIFTTLLRKYRSGMKSEVGIFFPML 381

  Fly   639 -----------------SVTSAERNL------------NSDLGSDRSNSPHTWKR------GTAL 668
                             :|.|...|:            |.|...:   ||:.::|      .|||
plant   382 VLRVLENVLQPSFVQKMTVLSLLENICHDPNLIIDIFVNFDCDVE---SPNIFERIVNGLLKTAL 443

  Fly   669 N---------SSQQFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGM---PPADD 721
            .         |..|..|...:|...:    |.:....|.:..| |.:|..:.....:   .||::
plant   444 GPPPGSSTILSPVQDITFRHESVKCL----VSIIKAMGTWMDQ-QLSVGDSLLPKSLENEAPANN 503

  Fly   722 HAISSHT--SAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV----GLNLFNKK 780
            |:.|:..  :...::.|.....|      ::.||.:.|         :|.|::    |:.|||:|
plant   504 HSNSNEEDGTTIDHDFHPDLNPE------SSDAATLEQ---------RRAYKIERQKGVTLFNRK 553

  Fly   781 PEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQ 845
            |.|||.:||....:.|:|..|..||....||:..|||:|||. :..|.|.|:..:....|.....
plant   554 PSKGIEFLISSKKVGNSPDEVVSFLRNTTGLNATMIGDYLGE-REDFPMKVMHAYVDSFDFKEMN 617

  Fly   846 VDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHT 910
            ...|:|.|...||:|||||||:|:||.|::|:|:||.:   ...|:||.:|||:::||||||.| 
plant   618 FGEAIRFFLRGFRLPGEAQKIDRIMEKFAERFCKCNPN---SFSSADTAYVLAYSVIMLNTDAH- 678

  Fly   911 PNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSD 959
             |:..:.:|...|||:|.|||||..|:.::.|..:||:|..:|.|..||
plant   679 -NIMVKEKMTKADFIRNNRGIDDGKDLPEEYLGALYDQVVINEIKMSSD 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 79/191 (41%)
PH_IQSEC 981..1108 CDD:270128
AT4G38200NP_195533.2 PLN03076 11..1685 CDD:215560 150/569 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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