DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and Psd2

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_036017188.1 Gene:Psd2 / 74002 MGIID:1921252 Length:771 Species:Mus musculus


Alignment Length:528 Identity:121/528 - (22%)
Similarity:187/528 - (35%) Gaps:168/528 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   563 SGSTGSGSGGSGSGSSKKVPPEV-PKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLC------ 620
            :.|.|..|..||.|..|.:...: |.|...:..              |..:|..||||.      
Mouse    36 AASEGLSSHISGPGGEKTLEGTMEPVRGPDVAL--------------PGLNLSLTNGLALGQDGN 86

  Fly   621 --------KTAENGSLTSVQSSGS---------------------DSSVTSAERNLNSDLGSDRS 656
                    ||..:|........||                     |....:.|:.|.|:|     
Mouse    87 ILEDSIEFKTWRSGPAEEEDVPGSPCPDAGDPQLGLDCPGEPDVRDGFSATFEKILESEL----- 146

  Fly   657 NSPHTWKRGTALNSSQQFS----THSADS---------------------AGAVSGGG------- 689
                  .|||..:|.....    |..:||                     |||..|.|       
Mouse   147 ------LRGTQYSSLDSLDVLSLTDESDSCVSFEAPLTPLIQQRARDSPEAGAGLGNGDMGPEGD 205

  Fly   690 VGVAGGA-GVYAAQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQ--HE----------QQQH 741
            :|..||. |...:.::.:::::.:..         :.||.|......  ||          :...
Mouse   206 LGATGGCDGELGSPLRRSISSSRSEN---------VLSHLSLTSVPNGFHEDGPGGSGGDDEDDE 261

  Fly   742 EQQQLQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGV----- 801
            :..:|..:|:...:...  :|::..:.....||...:..|            |.|..|||     
Mouse   262 DTDKLLNSASDTSLKDG--LSDSDSELSSSEGLEPGSTDP------------LANGCQGVSEAAR 312

  Fly   802 --ARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQ 864
              ||.|...:|..|..:...||. .|:|:..|...:....|.||..:|.|||.|...|.:.||.|
Mouse   313 RLARRLYHLEGFQRCDVARQLGK-NNEFSRLVAGEYLSFFDFSGLTLDRALRTFLKAFPLMGETQ 376

  Fly   865 KIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLR 929
            :.||::..||:|||:||.|   ...|.|.|..|..|:::|||||| .::...::|..:.||.||.
Mouse   377 ERERVLTHFSRRYCQCNPD---DSTSEDGIHTLTCALMLLNTDLH-GHVNIGKKMSCQQFIANLD 437

  Fly   930 GIDDCHDIDKDMLMGIYDRVKS---------------------DEFKPGSDHVTQVMKVQATIVG 973
            .::|..|..||:|..:|:.:|:                     |:|..|:..||:::.      |
Mouse   438 QLNDGQDFAKDLLKTLYNSIKNEKLEWAIDEDELRKSLSELVDDKFGTGTKKVTRILD------G 496

  Fly   974 KKPNLALP 981
            ..|.|.:|
Mouse   497 GNPFLDVP 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 64/215 (30%)
PH_IQSEC 981..1108 CDD:270128 1/1 (100%)
Psd2XP_036017188.1 Sec7 294..462 CDD:238100 61/184 (33%)
PH_EFA6 508..631 CDD:270107
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838938
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.830

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