DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and psd3l

DIOPT Version :10

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_068079995.1 Gene:psd3l / 559329 ZFINID:ZDB-GENE-030131-8195 Length:1135 Species:Danio rerio


Alignment Length:1050 Identity:200/1050 - (19%)
Similarity:358/1050 - (34%) Gaps:323/1050 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 RARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASS---------- 389
            |.|.|......||.........|.|.|.||.|           ...|.||:.:||          
Zfish   165 RLRPAVPVKVEAFDRVSSSSTHAEIVAKAKYE-----------FLFGKAEDSSSSDSVTSPPQAK 218

  Fly   390 ---SSAYGSATE---------------------SQLTEQQQQQQAQQQQQPRVTIMAGPAGAASP 430
               ||...|..:                     |.||.:.|....:|..      ::|.| .|||
Zfish   219 EKGSSILDSTLDDDDIDETSLFQEIDRELSNLLSGLTARSQHAATEQGS------LSGDA-TASP 276

  Fly   431 -----GLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEP 490
                 |.::|.|:: |.| ..:.||.      |:|.|  .::..::.||.|........| ..:|
Zfish   277 MIPCNGQNQTLPSQ-LEM-ANQGLDL------QNGQS--ELTGDSLLTSGLLFDSWCEAL-IKDP 330

  Fly   491 HYYNAQALPQGAAYYTSYHGSPHDLSYAS--SADTSLNASWVNTSGHSPHTPYYSAAQIYMRPKG 553
                           :|...:.::||..|  :|...|:||         .||    |..::.|.|
Zfish   331 ---------------SSVMAAANELSCFSTGNAPDKLDAS---------PTP----AGAHVEPSG 367

  Fly   554 GSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQ-------------R 605
            ...:     ..::|..:.|..:||...:..:.|.......:.:::..:|.:             .
Zfish   368 EVLS-----QENSGKETEGKRTGSPSPIRTDEPSAEIVDESLEESNKILAEVPGIFSGFLEGGKL 427

  Fly   606 QTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNS 670
            :..||..|.......::..||.:    .:||..| .|.:..:..|:   :|.:.....:|:.|..
Zfish   428 RDKPPKKLRFVESRAESLVNGEM----QNGSHQS-CSVKEEVTQDI---QSTAAAGVPQGSVLRP 484

  Fly   671 SQQFSTHSAD--SAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADD------HAISSH 727
            .|:.:.:..|  |||..:.|.:..   ..|::.|.:..:.:....|.:..:.|      :.:...
Zfish   485 EQKPTENGTDRCSAGKSAAGEIDT---TDVFSCQFENILESERLRGTLYSSMDSLDALSNPVPEP 546

  Fly   728 TSAAQYEQH----------EQQQHEQQQLQAAAAAAGVAQNYK-MSETIRKRQYRVGL------- 774
            |..:..|..          .||:.:.:.|....||..::.:.: :|.|..|.:.:..|       
Zfish   547 TPQSTLEPSFAFDIPLTPMIQQRLKDRSLFLEPAAPDLSSDTEVLSVTSTKERGKTALEVTSSFL 611

  Fly   775 ------------NLFNKKPEK-----------GI-------------------TYLIRRGFLENT 797
                        |..|::..|           |:                   |.::..|  ..:
Zfish   612 SAGCKDSCAALANGLNERDPKDWLQGCLSSDAGLKDVLSDWDSDMDVVECLKDTDVLHNG--SRS 674

  Fly   798 PQGVARFLITR----KGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFR 858
            .|..||.|..|    :|..|..:.::||. .|.|:..|...:....:.:.:.:|.:||.|...|.
Zfish   675 DQEAARRLARRLYHLEGFRRSDVAKHLGK-NNDFSKMVAEEYLTFFEFTDQTLDQSLRCFLKAFS 738

  Fly   859 MPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVED 923
            :.||.|:.||::..||.||.:||..|:   .:.|.:..|..|:::||||||.||:  .::|..::
Zfish   739 LMGETQERERVLIHFSNRYYQCNPTII---TAQDGVHCLTCALMLLNTDLHGPNI--GKKMTCQE 798

  Fly   924 FIKNLRGIDDCHDIDKDMLMGIYDRVKS---------DEFKPG------SDHVTQVMKVQATIVG 973
            ||.||.|::...|..:::|..:|:.:|:         ||.|..      .:|.:....:.....|
Zfish   799 FINNLDGLNGGQDFPRELLKSLYNSIKNEKLEWAVDGDELKKSLSELADKNHHSHSKSISRISSG 863

  Fly   974 KKPNLALPH---------------------------------------RRLVCYCRLYE------ 993
            ..|.|.:.|                                       :.::.|.:..|      
Zfish   864 SNPFLDIAHDPNAAVYKTGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGMILYLQKDEYKPEKA 928

  Fly   994 IPDVNKKERPGVHQREVFLFNDLLVITKIFSKKKTSV---------TYTFRNSFP--------LC 1041
            :.:.:.|....||.        .|.|..:..:||.:|         .:.|:...|        :.
Zfish   929 LSEDDLKNAISVHH--------ALAIKAMDYEKKPNVLKLKTADWRVFLFQAQSPEEMESWIRII 985

  Fly  1042 GTVVTLLDMPNYPFCIQLSQKVDGKILI--------------TFNARNEHDRCKFAE------DL 1086
            .:|..:...|::|..|. |||...:.|:              :..|:.:|...:.||      |.
Zfish   986 NSVAAMFSAPSFPAAIG-SQKKFSRPLLPATTTRMSQEEQLKSHEAKLKHVSTELAEHRSYPPDK 1049

  Fly  1087 KESISEMD---------EMESLRIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQQGSQA 1142
            |....|:|         |.|..|.|..::..|....... .|::.|:.:...:..|...|....|
Zfish  1050 KVKAKEIDEYRLKEHYLEFEENRYEMYVKLLKEGVKELL-TAKDGDAALKKSQSSPSLNQDSQPA 1113

  Fly  1143 SGEQAPNSAD 1152
            :.:...|:::
Zfish  1114 AAKVKRNTSE 1123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:460178 59/249 (24%)
PH_IQSEC 981..1108 CDD:270128 33/217 (15%)
psd3lXP_068079995.1 Sec7 675..829 CDD:238100 50/159 (31%)
PH_EFA6 873..998 CDD:270107 14/132 (11%)

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