DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and step

DIOPT Version :10

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster


Alignment Length:795 Identity:184/795 - (23%)
Similarity:306/795 - (38%) Gaps:210/795 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 RERRQLDCSP-------IPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALPQG 501
            |:.:...|||       :.|.|    |...|...:||:.:.....|:|      .::.::: |:.
  Fly    20 RQPKNKKCSPGLGGSESVGRKQ----PLQRSCLDLSTTRVGCDGCVSL------EFFQSES-PES 73

  Fly   502 AAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTP-----S 561
            ....::::.:..::|.|...|                    :...:..|..|..::|:.     |
  Fly    74 RRSNSTFYVNTQNVSSAVFKD--------------------NRQPLLERGSGSDSSPSSVCVRCS 118

  Fly   562 CSGSTGSGSGG-----SGSGSSKKV---PPEVPKRTS--SITAQQQTQLLLLQRQTPPP--PSLL 614
            |:..|.||...     :...|..|:   ||..|:..|  ..|:.....:..|...:|||  |:| 
  Fly   119 CNSITKSGDRNETPTMATPKSDIKIALKPPPKPRSPSMAPYTSVATYNITKLAPDSPPPASPTL- 182

  Fly   615 RTNGLCKTAENGSLTSVQSSGSDSSVTSAER----NLNSDLGSDRSNSPHTWKRGTA-------- 667
                        |..:|..|...:.||..:|    ..|::|.|.|:...||....|.        
  Fly   183 ------------STQTVNCSDVTTKVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRP 235

  Fly   668 ----LNSSQQFSTHSA--DSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDHAISS 726
                ||.:.:.....:  .|.....|..:.|....|.....|:|...:..:....|..||.....
  Fly   236 VELLLNENGEIIARRSPRKSRSNSLGRMLDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFID 300

  Fly   727 HTSAAQYE------------------QHEQQQHEQQQLQAAAAAAGVAQNY-------------- 759
            .:|.:|.|                  .::.::..||.....:....:.:||              
  Fly   301 DSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESCRMLLDRNYINTEQSDNLVILRR 365

  Fly   760 -------KMSETI----------------RKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGV 801
                   ::.|.:                :.:|..:|...||..|:|||.||:....|.:.||.|
  Fly   366 PSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDV 430

  Fly   802 ARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKI 866
            |.||...:||::..||:|||. :|.||..||..|....|.:...:..|||:|...||:|||||||
  Fly   431 AHFLYKGEGLNKTAIGDYLGE-KNDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKI 494

  Fly   867 ERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGI 931
            :|:||.|:||||:.|.||   ..::||.:||:||||||||.||.|::|.  :..|:.||...|||
  Fly   495 DRMMETFAQRYCQLNPDI---FTNTDTCYVLSFAIIMLNTSLHNPSVKD--KPTVDQFISMNRGI 554

  Fly   932 DDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPD 996
            ::..|:.:.:|..:|:.::::.||...|....:|                        ..:..||
  Fly   555 NNGGDLPRGLLESLYESIRTEPFKIPQDDGNDLM------------------------HTFFNPD 595

  Fly   997 VNKKE--------RPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDMPNY 1053
               ||        |....:|..|:.||..:....::..|..     |...||....|..:...:.
  Fly   596 ---KEGWLWKQGGRYKSWKRRWFILNDNCLYYFEYTTDKEP-----RGIIPLENISVREIHDRSK 652

  Fly  1054 PFCIQL-----------------SQKVDGK-ILITFNARNEHDRCKFAEDLKESISEMDEMESLR 1100
            |.|.:|                 .:.|:|| .:...:|..|.|:.::.:.|.:|||.....:.| 
  Fly   653 PHCFELFATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDIL- 716

  Fly  1101 IEAELERQKSARNRA 1115
                ::|:|.|.:::
  Fly   717 ----VQRKKKALSKS 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:460178 80/187 (43%)
PH_IQSEC 981..1108 CDD:270128 28/152 (18%)
stepNP_001036375.2 Sec7 395..577 CDD:460178 80/187 (43%)
PH_GRP1-like 592..710 CDD:269954 27/125 (22%)

Return to query results.
Submit another query.