DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and sec73

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001342851.1 Gene:sec73 / 3361502 PomBaseID:SPAC19A8.01c Length:1082 Species:Schizosaccharomyces pombe


Alignment Length:637 Identity:134/637 - (21%)
Similarity:236/637 - (37%) Gaps:148/637 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 SADTSLNASWVNTSGHSPHTPYYS-----AAQIYMRPKGGSTTPTPSCSGSTGSGSGG-----SG 574
            |:..|.|.|..:|:.:||:...:|     ::|.|:..:........|...|:||.:..     |.
pombe     7 SSQESSNKSEKDTTVNSPNASSFSSFFKKSSQTYLSKRSEKLNEHNSKLKSSGSFTSNSQTDLSN 71

  Fly   575 SGSSKK--VPPEVPKRTSSITAQQQTQLLLLQRQTP----PPPSLLRTNGLCKTAENGSLTSVQS 633
            |.||||  :...:.:...|..........|.|..:|    ...|:...:...|...:...|.:..
pombe    72 SPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSG 136

  Fly   634 SG----SDSSVTSAE---------------RNLNSDLGSDRSNSPHTW---KRGTALNSSQQFST 676
            |.    |.||:.||:               ::.|.|:.|..|:.....   |.|..||  ||...
pombe   137 SNPSLKSPSSINSAKLRASRSFFRFPKWSRKSWNPDVNSTTSSPSEVGSLDKAGGPLN--QQNEN 199

  Fly   677 HSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMP----PADDHAISSHTSAAQYEQHE 737
            .||:|...:...|   ...:.|..:.:...:|:      :|    |....:|||     .|.:..
pombe   200 LSAESDNTILQNG---TRKSSVKMSDLGKRIAS------LPVVKRPPIQFSISS-----DYIKPV 250

  Fly   738 QQQHEQQQLQAAAAAAGVAQNYK--------------------MSETI-------RKRQYRVGLN 775
            .:..:...:.:.:::.|..:.|:                    .|.||       |.|:.|..:.
pombe   251 DKSDQTSNVPSPSSSVGSLRLYRSPSIPNDVEQPQPQSSRSRPRSSTIPTQRTLERLRENRSSIF 315

  Fly   776 LF---NKKPEKGITYLIRRGFL-ENTPQGVARFLITRKGLSRQMIGE-YLGNLQN---------- 825
            .|   .:..::.:...|....| .:......:||.:...|:.....| ||..|:.          
pombe   316 SFRTLRRDDDECVAQTIENSALFSDIKPNPTKFLSSVPELTADDTAESYLSKLRETVPYSRMIPV 380

  Fly   826 -------QFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNAD 883
                   ..|.|:..|.: .::...|.:|..||.|.....:|.|.|:|:|::..||:||.|||. 
pombe   381 LAEKDHVTLNKALHLCMS-GMEFENRPLDFCLRLFLLKSHLPKETQQIDRVINAFSKRYFECNP- 443

  Fly   884 IVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDR 948
              |...|.|..::|.|:::||:||:...|.|  .:|..::|| ||..||   ::..:::...||.
pombe   444 --GMFSSQDQCYILVFSLMMLHTDVFNSNNK--HKMTKQEFI-NLCDID---ELAPEIMEYYYDN 500

  Fly   949 VKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLF 1013
            :....|....|        :..::.|:.|               |..:...::|.|:......|.
pombe   501 ITFTPFVNLDD--------ELLLIEKEKN---------------EKYNFTSRKRLGLSPYTFTLE 542

  Fly  1014 NDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLD---MPNYPFCIQLSQK 1062
            |.|.:     |:.:.|::|..:...|....:.:||:   :.:.|..|||..|
pombe   543 NQLNI-----SRPEISLSYDGKFISPGIKDIASLLNVRKLISSPAIIQLVSK 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 53/209 (25%)
PH_IQSEC 981..1108 CDD:270128 17/85 (20%)
sec73NP_001342851.1 COG3942 5..>222 CDD:332523 48/219 (22%)
Sec7 <381..506 CDD:307500 40/134 (30%)
PH <710..767 CDD:214574
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10663
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.