DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and cyth1b

DIOPT Version :10

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_005169523.1 Gene:cyth1b / 325586 ZFINID:ZDB-GENE-030131-4311 Length:416 Species:Danio rerio


Alignment Length:194 Identity:86/194 - (44%)
Similarity:126/194 - (64%) Gaps:6/194 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   766 RKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMA 830
            |.:|..:|...||..|:|||.:||....|:||.:.:|:||...:||::..||:|||. :::||:.
Zfish    81 RSKQMAMGRKKFNMDPKKGIQFLIENELLKNTCEDIAQFLYKGEGLNKTAIGDYLGE-RDEFNIQ 144

  Fly   831 VLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIF 895
            ||..|....:.:...:..|||:|...||:|||||||:|:||.|:||||:||.   |..:|:||.:
Zfish   145 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNP---GVFQSTDTCY 206

  Fly   896 VLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSD 959
            ||:||||||||.||.||:|.  :...|.||...|||:|..|:.:|:|..:|:.:|::.||...|
Zfish   207 VLSFAIIMLNTSLHNPNVKD--KPSAERFICMNRGINDGGDLPEDLLRNLYESIKNEPFKIPED 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:460178 83/187 (44%)
PH_IQSEC 981..1108 CDD:270128
cyth1bXP_005169523.1 Sec7 81..263 CDD:460178 83/187 (44%)
PH_GRP1-like 278..397 CDD:269954
Blue background indicates that the domain is not in the aligned region.

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