DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and Psd2

DIOPT Version :10

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_038952793.1 Gene:Psd2 / 307500 RGDID:1311075 Length:772 Species:Rattus norvegicus


Alignment Length:536 Identity:126/536 - (23%)
Similarity:205/536 - (38%) Gaps:137/536 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 SSADTSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTP--SCSGSTGSGSGGSGSGSSKKV 581
            ::|..|||:..:     ||.:......:..|.|.|......|  |.|.:.|...|..|:.....|
  Rat    34 TAASESLNSHVI-----SPVSEKTGTLEGTMEPVGNPDVALPGLSLSLTNGLALGQDGNILEDSV 93

  Fly   582 PPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGS----DSSVTS 642
            ... |.|.|....::.|           |.|      ||..||:..| .:...|.    |....:
  Rat    94 ESR-PWRASGPAEEEDT-----------PRS------LCLDAEDTQL-GLDCPGEPDVRDGFSAT 139

  Fly   643 AERNLNSDLGSDRSNSPHTWKRGTALNS--------------------------SQQFSTHSADS 681
            .|:.|.|:|           .|||..:|                          .||.:..|.:.
  Rat   140 FEKILESEL-----------LRGTQYSSLDSLDVLSLTDESDSCVSFEAPLTPLIQQRARDSPEP 193

  Fly   682 AGAVSG-----GGVGVAGGA-GVYAAQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQ--HEQ 738
            ||...|     |.:|.|||. |...:.::.:::::.:..         :.||.|......  ||.
  Rat   194 AGLGIGDIGPEGDLGAAGGGDGELGSPLRRSISSSRSEN---------VLSHLSLTSMPNGFHED 249

  Fly   739 Q--------QHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPE----KGITYLIRR 791
            :        :.::...:...:|:..:....:|::..:.....||...:..|.    :|::...||
  Rat   250 EPGGSGGDDEDDEDTDKVLNSASDTSLKDGLSDSDSELSSSEGLEPGSTDPMANGCQGVSEAARR 314

  Fly   792 GFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAY 856
                     :||.|...:|..|..:...||. .|:|:..|...:....|.||..:|.|||.|...
  Rat   315 ---------LARRLYHLEGFQRCDVARQLGK-NNEFSRLVAGEYLSFFDFSGLTLDRALRTFLKA 369

  Fly   857 FRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRV 921
            |.:.||.|:.||::..||:|||:||.|   ...|.|.|..|..|:::|||||| .::...::|..
  Rat   370 FPLMGETQERERVLTHFSRRYCQCNPD---DSTSEDGIHTLTCALMLLNTDLH-GHVNIGKKMSC 430

  Fly   922 EDFIKNLRGIDDCHDIDKDMLMGIYDRVKS---------------------DEFKPGSDHVTQVM 965
            :.||.||..::|..|..||:|..:|:.:|:                     |:|..|:..||:::
  Rat   431 QQFIANLDQLNDGQDFAKDLLKTLYNSIKNEKLEWAIDEDELRKSLSELVDDKFGTGTKKVTRIL 495

  Fly   966 KVQATIVGKKPNLALP 981
            .      |..|.|.:|
  Rat   496 D------GGNPFLDVP 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:460178 62/212 (29%)
PH_IQSEC 981..1108 CDD:270128 1/1 (100%)
Psd2XP_038952793.1 Sec7 295..463 CDD:238100 59/181 (33%)
PH_EFA6 509..632 CDD:270107
Blue background indicates that the domain is not in the aligned region.

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