DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and Fbxo8

DIOPT Version :10

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001012050.1 Gene:Fbxo8 / 306436 RGDID:1307596 Length:319 Species:Rattus norvegicus


Alignment Length:210 Identity:58/210 - (27%)
Similarity:105/210 - (50%) Gaps:39/210 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   757 QNYKMSETIRK--RQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEY 819
            :|..:..:.||  .|...|...||..||:|::|.:.:|.|:::|:.:|:|:...:.|:.:.:..|
  Rat   124 KNPPLGFSFRKLYMQLDEGSLTFNANPEEGVSYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIY 188

  Fly   820 LG-------------NLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGE-AQKIERLM 870
            |.             |.:|||                  :..|||:|..:...|.| .:.:|.|:
  Rat   189 LDERRDVLDDLVTLHNFRNQF------------------LPNALREFFRHIHAPEERGEYLETLI 235

  Fly   871 EIFSQRYCECNADIVGRL-RSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDC 934
            ..||.|:|.||.|::..| .|.|.::||.:::|:|:.||.:|::|  .:|...:||:|.|..  .
  Rat   236 TKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVK--NKMSKREFIRNTRRA--A 296

  Fly   935 HDIDKDMLMGIYDRV 949
            .:|.:|.:..:||.:
  Rat   297 QNISEDFVGHLYDNI 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:460178 57/201 (28%)
PH_IQSEC 981..1108 CDD:270128
Fbxo8NP_001012050.1 F-box_FBXO8 68..113 CDD:438860
Sec7 133..312 CDD:238100 57/201 (28%)
Blue background indicates that the domain is not in the aligned region.

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