DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and Arfgef2

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_851597.2 Gene:Arfgef2 / 296380 RGDID:631430 Length:1791 Species:Rattus norvegicus


Alignment Length:788 Identity:180/788 - (22%)
Similarity:291/788 - (36%) Gaps:227/788 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 TIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQLTEQQQ 406
            |::..:..|:..|...:.|. |||.......::.|                   ..|:|:.::.:
  Rat   162 TVRTCYNIYLASKNLINQTT-AKATLTQMLNVIFT-------------------RMENQVLQEAR 206

  Fly   407 QQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLS---MRERRQLDCSPIPRSQSG-------- 460
            :.:...|.:|:..::...||  ||..||...:::.|   ..|:.:|......||..|        
  Rat   207 ELEKPIQSKPQSPVIQATAG--SPKFSRLKQSQAQSKPTTPEKTELPNGDHARSSLGKVNSENGE 269

  Fly   461 ------------ASPASISSS-----------TVSTSALASHPHVNLLHAAE----PHYYNAQAL 498
                        |.|:..|.:           .|.|||:.        .|||    |....|..:
  Rat   270 AHRERGSSISGRAEPSGGSDNGAQEVVKDILEDVVTSAVK--------EAAEKQGLPEPDQAPGV 326

  Fly   499 PQ--------GAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGH------------SPHTPYYS 543
            |:        .....:..:|...|....|||| :|..   :..||            .....:.|
  Rat   327 PECQECTVPPAVDENSQTNGIADDRQSLSSAD-NLEP---DAQGHPVAARFSHILQKDAFLVFRS 387

  Fly   544 AAQIYMRPKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTP 608
            ..::.|:|.|                          :.||: ||.....:.....||||...|..
  Rat   388 LCKLSMKPLG--------------------------EGPPD-PKSHELRSKVVSLQLLLSVLQNA 425

  Fly   609 PPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSA----------------------------ER 645
            .|  :.|::.:..||....|....|....|||...                            |.
  Rat   426 GP--VFRSHEMFVTAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQIEVFFKEI 488

  Fly   646 NLNSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVYAAQM------Q 704
            .||. |.:..|:..|.|.      ..|..:...||:...|.   :.|.....:.||.:      .
  Rat   489 FLNI-LETSTSSFEHRWM------VIQTLTRICADAQCVVD---IYVNYDCDLNAANIFERLVND 543

  Fly   705 AAVAAATAAG---GMPPADDHAI--------------------------SSHTSAAQYEQHEQQQ 740
            .:..|...:|   ||.|..:.::                          :...:..|....:|:.
  Rat   544 LSKIAQGRSGHELGMTPLQELSLRKKGLECLVSILKCMVEWSKDLYVNPNHQATLGQERLPDQEM 608

  Fly   741 HEQQQLQAA--------------AAAAGVAQNYKMSETIRKRQYRV--GLNLFNKKPEKGITYLI 789
            .:.:.|..|              .....:..:.:..|.|::::..:  |:.||||||::||.:|.
  Rat   609 GDGKGLDMARRCSVTSVESTVSSGTQTAIPDDPEQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQ 673

  Fly   790 RRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQ 854
            .:|.|....:.:|:||...:.|....:||:||: ..:||..|:..:..:||...::...|||.|.
  Rat   674 EQGMLGAAVEDIAQFLHQEERLDSTQVGEFLGD-STRFNKEVMYAYVDQLDFCEKEFVSALRTFL 737

  Fly   855 AYFRMPGEAQKIERLMEIFSQRYCECNADIVGR--LRSSDTIFVLAFAIIMLNTDLHTPNLKPER 917
            ..||:|||||||:||||.|:.||.|||.   |:  ..|:||.:|||::||||.||||:|.:|  .
  Rat   738 EGFRLPGEAQKIDRLMEKFAARYIECNQ---GQTLFASADTAYVLAYSIIMLTTDLHSPQVK--N 797

  Fly   918 RMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRV--KSDEFKPGSDHVTQVMKVQATIVGKKPNLAL 980
            :|..|.:||..|||:|..|:.::.|..||:.:  |....|...:|   .|..::|    |.|:|.
  Rat   798 KMTKEQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKEH---TMATKST----KQNVAS 855

  Fly   981 PHRRLVCY 988
            ..:|.:.|
  Rat   856 EKQRRLLY 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 78/193 (40%)
PH_IQSEC 981..1108 CDD:270128 2/8 (25%)
Arfgef2NP_851597.2 DCB, DCB:DCB domain and DCB:HUS domain interaction. /evidence=ECO:0000250 2..224 12/81 (15%)
PLN03076 11..1718 CDD:215560 180/788 (23%)
DCB 28..198 CDD:292830 8/55 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..292 17/85 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 311..350 7/38 (18%)
Sec7_N 377..531 CDD:289549 34/192 (18%)
HUS, DCB:HUS domain interaction. /evidence=ECO:0000250 515..535 5/22 (23%)
Sec7 650..834 CDD:279680 78/189 (41%)
DUF1981 1174..1255 CDD:286414
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342747
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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