DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and gbf-1

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001366879.1 Gene:gbf-1 / 176609 WormBaseID:WBGene00007703 Length:1975 Species:Caenorhabditis elegans


Alignment Length:657 Identity:142/657 - (21%)
Similarity:235/657 - (35%) Gaps:143/657 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   689 GVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAAAAA 753
            |:.|..|   |....:.|::....|..||.:....:.|:..|...|.....|..:|:.       
 Worm   576 GLPVLSG---YDLAKKMAISTGGKASPMPVSSSIVLRSNRHAPSTELPSMSQIIEQKK------- 630

  Fly   754 GVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGE 818
                        |||....|..|||:.|:|||.:|..:|.|.:..|.:.::|.|...|.::.|.:
 Worm   631 ------------RKRLIAEGTELFNQSPKKGIAFLREKGILGHDEQSLVQWLRTNPQLDKKAIAD 683

  Fly   819 YLGNLQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNAD 883
            |:.|.:   :..||:.|.........::|||||.|...||:|||:.:|..:|:.||:.:...|.:
 Worm   684 YICNRK---HAEVLNAFVKSFPFENTRLDVALRMFLETFRLPGESAEIALVMQHFSEEWFRANNE 745

  Fly   884 IVGRLRSSDTIFVLAFAIIMLNTDLHTPNLK-PERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYD 947
            ....:   |..|.|::||||||.|.|.|..| .:..|.|:.|.:||.|.:|..|.|.:||..:|.
 Worm   746 PFFHV---DAAFTLSYAIIMLNVDQHNPQAKRSQPPMTVDCFRRNLSGTNDSRDFDPEMLADMYQ 807

  Fly   948 RVKSDEFKPGSDHVTQVMKVQATIVGKKPNL--ALPHRRLVCYCRLYEIPDVNKKERPGVHQREV 1010
            .:|::|.         ||..:.....|:..:  .|..|........|..|       .|.:..::
 Worm   808 AIKTEEI---------VMPAEQKGTVKEDYMWKVLLRRGETAEGSFYHAP-------TGWNDHDL 856

  Fly  1011 FLF---NDLLVITKIFSKKK-TSVTYTFRNSFPLCGTVVTLLDMPNY--PFCIQLSQKVDGKILI 1069
            |..   ..:..::.:|.|.: ..:.......:..|..:.....|...  ..||.|          
 Worm   857 FAVCWGPAVAALSYVFDKSEHEQILQKALTGYRKCAKIAAYYGMKEVFDNLCIHL---------- 911

  Fly  1070 TFNARNEHDRCKFAEDLKESISEM---------DEMESLRIEAELERQKSARNRAPGNAENRDSG 1125
                      |||.     :::.|         ||...|...|.|....|....|....||..:.
 Worm   912 ----------CKFT-----TLTSMRDGGAGGGADEDVDLSAAALLSHSSSPEAVALAFGENHKAQ 961

  Fly  1126 VADVEVCPCPYQQGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQFGNEK------------- 1177
            :|...:....::.|: ...|...|..:...||.|:.|..:.|...|.:.:||             
 Worm   962 LATRTLFYLVHENGN-ILREGWRNLFEALLQLFRARLLPAELTEVEDYVDEKGWVNIQRVHQKEL 1025

  Fly  1178 PQRRGSVGSLD-SGMSISFQSTTTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYA 1241
            |..|...|.|. .|:............::|..:::..|:...:..:             ||.:.|
 Worm  1026 PHTRNDSGLLSWFGLGGGASEADRRKPTQEQLSSMKLASQVISECR-------------PSQIVA 1077

  Fly  1242 APGMQAYTHANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQAQPLTGRI 1306
                    .:.::..:..|.:|                    .:.|...||...||:.|..|..:
 Worm  1078 --------DSKYLTSTSLAELL--------------------SSIAANSAQIVEQAEPQQKTASL 1114

  Fly  1307 PGRERKA 1313
            .|.:..|
 Worm  1115 SGEDEDA 1121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 66/188 (35%)
PH_IQSEC 981..1108 CDD:270128 21/141 (15%)
gbf-1NP_001366879.1 COG5307 354..>998 CDD:227623 116/491 (24%)
Sec7 631..814 CDD:396096 66/188 (35%)
PLN03209 <1696..1810 CDD:178748
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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