DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and grp-1

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_498764.1 Gene:grp-1 / 176140 WormBaseID:WBGene00001743 Length:393 Species:Caenorhabditis elegans


Alignment Length:338 Identity:84/338 - (24%)
Similarity:135/338 - (39%) Gaps:82/338 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   773 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAM 837
            |...||:.|.|.:.:|..|..:...||.:|.::...:|||:..|||.||: ...|.:..|..|..
 Worm    67 GRKKFNQDPWKALDWLASRNVVAKDPQALALWMKAGEGLSKSAIGEILGD-NRPFALETLDRFTK 130

  Fly   838 ELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFAII 902
            |..|....:..|||::...||:|||:|||.|::|.|::.|...|..    ..::|....:|::.|
 Worm   131 EHKLHDVPIVPALRQYLFSFRLPGESQKINRILEKFAEVYANQNPS----YGNADQAHTVAYSCI 191

  Fly   903 MLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKV 967
            |:||.||.||:|.  :..:|.:|:....:.:...|..:.|..:|:.|...:||            
 Worm   192 MVNTLLHNPNVKD--KPSLEKYIEMNEQLLEKGAITIEQLTEVYESVSVTQFK------------ 242

  Fly   968 QATIVGKKPNLALPHRRLVCYCRLYEIPDVNKKERPG------VH-QREVFLFNDLLVITKIFS- 1024
                                      |||.......|      :| :||.:||..  ....:|| 
 Worm   243 --------------------------IPDEVSTSGKGTVNDILLHAEREGWLFKQ--SSNPLFSG 279

  Fly  1025 ----KKKTSV-----TYTF--------RNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN 1072
                ||:..|     .|.|        :....|....:..::.|:.||..::....||:|     
 Worm   280 ALSWKKRWFVLSENCLYYFDQMTDKEPKGIITLANVGIRKVEAPSRPFMFEIFSLSDGQI----- 339

  Fly  1073 ARNEHDRCKFAED 1085
                 ..||..:|
 Worm   340 -----KACKTEQD 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 56/180 (31%)
PH_IQSEC 981..1108 CDD:270128 26/130 (20%)
grp-1NP_498764.1 Sec7 60..241 CDD:238100 56/180 (31%)
PH_GRP1-like 261..382 CDD:269954 22/99 (22%)
PH 263..380 CDD:278594 21/97 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160396
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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