DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment siz and Psd

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_599197.2 Gene:Psd / 171381 RGDID:620297 Length:1023 Species:Rattus norvegicus


Alignment Length:969 Identity:200/969 - (20%)
Similarity:320/969 - (33%) Gaps:319/969 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 PAGAAS--PGLSRTPPTRSLSMRERRQLD--CSPIPRSQSGA---------SPASI----SSSTV 471
            |||..|  || || .|:|...:..:...|  .|.:|....|.         .||..    ...|.
  Rat   160 PAGGGSVLPG-SR-DPSRGPLIPPQIGADGLYSSLPNGLGGTPEHLVMHFRGPADTGFLNQGDTW 222

  Fly   472 STSALASHPHVNLLHAAEPHYYNA------------QALP-------QG-------AAYYTS--- 507
            |:..::||.. .:..|....:|.:            ||||       ||       ||.|:.   
  Rat   223 SSREVSSHAQ-RIARAKWEFFYGSLDPPSSGAKPPEQALPSHGVGSKQGSGVAVGRAAKYSETDL 286

  Fly   508 -------YHGSPHD--LSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCS 563
                   |..:..|  |:....||:::.:.  .:|...|.|         .:|.....:|.|..|
  Rat   287 DKVPLRCYRETDIDEVLAEREEADSAIESQ--PSSEGPPGT---------TQPPASRPSPCPGPS 340

  Fly   564 GSTGSGSGGSGSGSSKKVPPEVPKRTSSI-TAQQQTQLLLLQRQTPPPP---------------- 611
            .|.|||:|...:|..:.|..||.:.:... .........||:...|..|                
  Rat   341 SSLGSGNGDDEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSPVPFLPGTSPSADGPDSFSCMF 405

  Fly   612 SLLRTNGLCKTAENGSLTSVQSSGSDSSVTS------------AER----------NLNSDLG-S 653
            ..:..:...|.....||.|:::..|.....|            |.|          .|..|.| |
  Rat   406 EAIMESHRAKGTSYSSLASLEALASPGPTQSPFFTFEMPPQPPAPRPDPPAPAPLAPLEPDSGTS 470

  Fly   654 DRSNSPHTWKR-------GTALNSSQQF--STHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAA 709
            ..::.|.|.:|       |..|...::.  .:||.||.|                        ..
  Rat   471 SVADGPWTQRREVEESDAGATLAPRKELPSPSHSEDSLG------------------------LG 511

  Fly   710 ATAAGGMPPA------DDHAISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKR 768
            |...|..||.      .|..:.|....|..........::..|:||             :.:.||
  Rat   512 AAPLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAA-------------QRLAKR 563

  Fly   769 QYRVGLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLS 833
            .||  |:.|.|                   ..|||.|......|:.:.||||     :|.:    
  Rat   564 LYR--LDGFRK-------------------ADVARHLGKNNDFSKLVAGEYL-----KFFV---- 598

  Fly   834 CFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLA 898
                   .:|..:|.|||.|.....:.||.|:.||::..|||||.:||.:   .|.|.|....|.
  Rat   599 -------FTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPE---ALSSEDGAHTLT 653

  Fly   899 FAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDH--- 960
            .|:::||||||..|:  .:||...|||.||.|::|..|..:::|..:|..:|:::.:...|.   
  Rat   654 CALMLLNTDLHGHNI--GKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKNEKLQWAIDEEEL 716

  Fly   961 ---VTQVMKVQATIVGK-----------------KPNLAL-PHRRLVCYCRLYEIPDVNKKER-- 1002
               ::::......::.:                 :|..|: .|..||  .:::..||..|..|  
  Rat   717 RRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALV--RKVHADPDCRKTPRGK 779

  Fly  1003 -----------------------PGVHQREVFLFNDLLVITKIFSK-----KKTSVTY------- 1032
                                   ||....|..|.|.:.:...:.::     |:..|.|       
  Rat   780 RGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKRPHVFYLRTADWR 844

  Fly  1033 ----------TFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFNAR-NEHDRCKFAE-D 1085
                      ..::.......|..:...|.:|..:...:|....:|.:...| ::.::.:..| .
  Rat   845 VFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEAK 909

  Fly  1086 LKESISEMDEMESLRI-------EAELERQKSA----------------RNRAPGNAENRDSGVA 1127
            ||...||:.|..:..:       |||.:|||..                |.:....:|..|:..|
  Rat   910 LKAMASELREHRAAHLGKKARGKEAEEQRQKETYLEFEKSRYGTYAALLRVKMKAASEELDAIEA 974

  Fly  1128 DV-------EVCPCPYQQGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQFGNEKPQ 1179
            .:       |.||.|:   |..|.:..|.|...:|:....|.:.:        |:.:|:
  Rat   975 ALAQAGSTEEGCPPPH---SSPSLQPNPTSQPRAQRPGSEARAGA--------GSTRPK 1022

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 60/187 (32%)
PH_IQSEC 981..1108 CDD:270128 30/182 (16%)
PsdNP_599197.2 Sec7 541..707 CDD:238100 63/220 (29%)
PH_EFA6 752..876 CDD:270107 19/125 (15%)
PH 756..864 CDD:278594 15/109 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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