DRSC/TRiP Functional Genomics Resources

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Protein Alignment siz and arfgef2

DIOPT Version :9

Sequence 1:NP_730594.1 Gene:siz / 40327 FlyBaseID:FBgn0026179 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_002666513.2 Gene:arfgef2 / 100334572 ZFINID:ZDB-GENE-090312-50 Length:1846 Species:Danio rerio


Alignment Length:1009 Identity:229/1009 - (22%)
Similarity:336/1009 - (33%) Gaps:338/1009 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 SINMPHHHVH--------AMPYNV-----------------DELL-----RENNALHAKIKELSL 97
            ::..||..:|        ...||:                 .::|     |..|....:.:|...
Zfish   161 AVTSPHIEIHEGTILLTVRTCYNIYLASRNLINQTTAKATLTQMLNVIFTRMENQAALEAQEAEK 225

  Fly    98 ERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQPGSANASTCTDSG 162
            ||.||     .||   :.|.:...|..::.|..|.....|||.....|.::|    |.|.|....
Zfish   226 ERQRL-----QLR---NPSPVSSNPSPVNQNPSQTPGRGSGSPWMGRACSEQ----NGSPCLSPP 278

  Fly   163 SVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQQYPTCHQQQQQQHLQQQQHLHQTGAGH 227
            .|..        .|.....|::||    ..|:..:...:..|.......:.||:..   ||    
Zfish   279 GVPS--------TPSTPQDSSSIN----SRPEEEFATDKQSTKDITHPDEELQESD---QT---- 324

  Fly   228 YMQVTATGGGQYHHHHMLHGHGHHAHHHGGAVVIAGSGVGTGLG-SGATSVIMQHQQQQ------ 285
            .:..:.|||.:....|      ..:....|:.|:..:...:||| |.....:.||...:      
Zfish   325 TVDPSVTGGVEGEETH------PQSETEAGSEVLEETEPDSGLGDSSVEGGLDQHSDSETRMPPP 383

  Fly   286 -----QQQQNMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQR 345
                 .||.|          |.|..|     ..|.|.|:|:     .|..:|...|..       
Zfish   384 VVRVDTQQMN----------GMVDDR-----GSESSTDMLD-----AESIHGSQTAAR------- 421

  Fly   346 AFRHYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQLTEQQQQQQA 410
             |.|.:....|....::.|    ||.:.:.         :|.....::  ...|::...|.....
Zfish   422 -FSHILQKDAFLVFRSLCK----LSMKPLA---------DGPPDPKSH--ELRSKVVSLQLLLSV 470

  Fly   411 QQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVSTSA 475
            .|.        |||...          |..:.:...:|..|..:.::...:.|.....|......
Zfish   471 LQG--------AGPVFR----------THEMFVNAIKQYLCVALSKNGVSSVPEVFELSLAIFLT 517

  Fly   476 LASHPHVNLLHAAEPHYYN-------------------AQALPQGAA-------YYTSYHGSPHD 514
            |.||..|:|....|..:..                   .|.|.:..|       .|.:|      
Zfish   518 LLSHFKVHLKMQIEVFFREIFLTILETSSSSFEHKWMVIQTLTRICADAQCVVDIYVNY------ 576

  Fly   515 LSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGGSGSGSSK 579
                   |..||                 ||.|:.|        ..:.......|..|...|   
Zfish   577 -------DCDLN-----------------AANIFER--------LVNDLSKIAQGRSGQELG--- 606

  Fly   580 KVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGL-CKTAENGSLTSVQSSGSDSSVTSA 643
                                      .||.....||..|| |..:   .|..:.....|..|.. 
Zfish   607 --------------------------MTPLQELSLRKKGLECLVS---ILKCMVEWSRDMYVNP- 641

  Fly   644 ERNLNSDLGSDR---------SNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVY 699
              ||.::||.:|         ..|.|.        ||::.|..|.||  .||         :||.
Zfish   642 --NLQANLGQERPAEGDSADVKLSEHL--------SSRRDSVSSLDS--TVS---------SGVQ 685

  Fly   700 AAQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSET 764
            .:|                 .||       ..|||..:||:                      |.
Zfish   686 QSQ-----------------PDH-------PEQYEVIKQQK----------------------EI 704

  Fly   765 IRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQN-QFN 828
            |..     |:.||||||::|:.||..:|.|..:|:.:|:||...:.|....:||:||  :| :||
Zfish   705 IEH-----GIELFNKKPKRGLQYLQEQGMLGTSPEDIAQFLQQEERLDTTQVGEFLG--ENVKFN 762

  Fly   829 MAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGR--LRSS 891
            ..|:.|:...||..|:....|||.|...||:|||||||:||||.|:.||.|||.   |:  ..|:
Zfish   763 KEVMYCYVDRLDFCGKDFVSALRAFLEGFRLPGEAQKIDRLMEKFAARYLECNQ---GQTLFASA 824

  Fly   892 DTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRV--KSDEF 954
            ||.:|||::||||.||||:|.:|  .:|..|.:||..|||:|..|:.::.|..|||.:  |....
Zfish   825 DTAYVLAYSIIMLTTDLHSPQVK--NKMTKEQYIKMNRGINDSKDLPEEYLSSIYDEIAGKKIAM 887

  Fly   955 KPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCY 988
            |...::       ..|....|.|:|...:|.:.|
Zfish   888 KESKEY-------SITPKSSKQNVANEKQRRLLY 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sizNP_730594.1 Sec7 766..954 CDD:279680 83/192 (43%)
PH_IQSEC 981..1108 CDD:270128 2/8 (25%)
arfgef2XP_002666513.2 PLN03076 16..1760 CDD:215560 229/1009 (23%)
DCB 38..213 CDD:292830 7/51 (14%)
Sec7_N 426..580 CDD:289549 28/199 (14%)
Sec7 701..885 CDD:279680 86/217 (40%)
DUF1981 1223..1304 CDD:286414
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582811
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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