DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdss2 and pdss1

DIOPT Version :9

Sequence 1:NP_001287138.1 Gene:Pdss2 / 40323 FlyBaseID:FBgn0037044 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001017656.1 Gene:pdss1 / 550349 ZFINID:ZDB-GENE-030131-4430 Length:411 Species:Danio rerio


Alignment Length:440 Identity:100/440 - (22%)
Similarity:189/440 - (42%) Gaps:87/440 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 AAPALQ--TFTSQRWTSTTTTSGKHASPQVTT-----PPPRHDWNRAVSEAERIVGY----PTSF 84
            ||..||  ..:|:|..:...::|:.|:....|     ....|.:|:.|:.:.....|    |...
Zfish    15 AAVLLQYCCISSRRAFTPAASAGRKAATSAATQVLFQQGHVHSFNKPVTLSRHRCKYLYSTPRVS 79

  Fly    85 LSLR---------WLLSDEIANVALHLRK--LVGSAHPLMKTAKHLLYNGKNTMQAW-GLIVLLV 137
            .||.         .|:..::.|:...:::  ||..|.  :|......::||.  :|: .:||:|:
Zfish    80 CSLHSDAKLKDPFSLVQKDLQNIYDDIKQQLLVSKAE--LKALCDYYFDGKG--KAFRPMIVILM 140

  Fly   138 SKAAGHAPSVPDVEQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQDVDTYDDMS 202
            ::|.       :|..:|...:|.:||::|.::|||..:.|||:.|:: .|..:.|:  :|.::: 
Zfish   141 ARAC-------NVHSNKEGVLLPAQRSIAMISEMIHTASLVHDDVID-DSDKRRGK--NTINNV- 194

  Fly   203 FGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEF--IGERDEQNNPLP-YKPGT 264
            :|.:..:|.||::|..:|..||.:.|..||.::|..:.|....||  :|.::.:|.... |...|
Zfish   195 WGERKAILAGDFILSAASMALARIGNTTVVSVLSQVIEDLVRGEFMQLGSKENENERFKHYLEKT 259

  Fly   265 FQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWECRNILNAGSLLGKSCQASLKLAGQSEELQR 329
            |::                                      ..||:..||:|...|.....|:..
Zfish   260 FKK--------------------------------------TASLIANSCKAVSILVNSDPEVHE 286

  Fly   330 HAYRFGKHLALAWQACLDAEPF----QCPQLP--LDVTFSLVSAPVLFHLEHDPGMYSQLEAGKQ 388
            .||::|:::.:|:|...|...|    .|...|  .|:...|.:.||||..:..|.::|.: ..:.
Zfish   287 IAYQYGRNVGIAFQLVDDILDFTSNANCLGKPSAADLKLGLATGPVLFACQQFPELHSMI-MRRF 350

  Fly   389 SVDNIDYDKIHKAILAGPALAKTKELQRKHTAAALAVLQHFPATDARQAL 438
            |.|. |.|:..:.:|....:.:|..|.:.:...|:..:.....:..|.||
Zfish   351 SSDG-DVDRAWQYVLKSDGVEQTNYLAQHYCQEAIRQISRLRPSSERDAL 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdss2NP_001287138.1 Isoprenoid_Biosyn_C1 86..441 CDD:294142 86/374 (23%)
pdss1NP_001017656.1 PLN02890 26..411 CDD:178478 96/429 (22%)
Isoprenoid_Biosyn_C1 92..409 CDD:294142 84/363 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0142
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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