DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdss2 and dps1

DIOPT Version :10

Sequence 1:NP_649277.1 Gene:Pdss2 / 40323 FlyBaseID:FBgn0037044 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_595276.1 Gene:dps1 / 2541402 PomBaseID:SPBPJ4664.01 Length:378 Species:Schizosaccharomyces pombe


Alignment Length:387 Identity:85/387 - (21%)
Similarity:165/387 - (42%) Gaps:68/387 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 IVGYPTSFLSLRWLLSDEIANVALHLRKLVGSAHPLMKTAK--HLLYNGKNTMQAWGLIVLLVSK 139
            ::.:.|:..:...|:.:|:..::..:|:::.|....::...  :.:..||....:   :|||:||
pombe    23 VLRFSTTNRNASHLIKNELEQISPGIRQMLNSNSEFLEECSKYYTIAQGKQMRPS---LVLLMSK 84

  Fly   140 AAGHAPSV------------PDVEQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAG 192
            |......:            .|:....:..:|.||..||::||||.|:.|:|:.|:: .::.:.|
pombe    85 ATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHDDVID-HANVRRG 148

  Fly   193 QDVDTYDDMSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEFIGERDEQN-N 256
               ....:::|||:..:|.|:::|..:|..:|.|||.:|.||:::.:.|....||:..::..: :
pombe   149 ---SPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLVRGEFLQLKNTMDPS 210

  Fly   257 PLPYKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWECRNILNAGSLLGKSCQASLKLA 321
            .|..|...|                              :.:..::.|...||:.|||:||..|.
pombe   211 SLEIKQSNF------------------------------DYYIEKSFLKTASLISKSCKASTILG 245

  Fly   322 GQSEELQRHAYRFGKHLALAWQACLDAEPFQCPQLPL------DVTFSLVSAPVLFHLEHDPGMY 380
            ..|..:...|..:|:.:..|:|...|...:......|      |:...|.:|||||..:..|   
pombe   246 QCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYP--- 307

  Fly   381 SQLEAGKQSVDNI----DYDKIHKAILAGPALAKTKELQRKHTAAALAVLQHFPATDARQAL 438
               |.|...|:..    |..:....:....|:.:|....:::...|...|...|.:.||:||
pombe   308 ---ELGAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPDSPARKAL 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdss2NP_649277.1 Isoprenoid_Biosyn_C1 86..441 CDD:469660 84/378 (22%)
dps1NP_595276.1 Isoprenoid_Biosyn_C1 28..376 CDD:469660 85/382 (22%)

Return to query results.
Submit another query.