DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdss2 and Pdss1

DIOPT Version :10

Sequence 1:NP_649277.1 Gene:Pdss2 / 40323 FlyBaseID:FBgn0037044 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001387776.1 Gene:Pdss1 / 100364990 RGDID:2319976 Length:409 Species:Rattus norvegicus


Alignment Length:448 Identity:93/448 - (20%)
Similarity:174/448 - (38%) Gaps:101/448 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GLRIMQQMRRRIPVELQPLQVAKAAPALQTFTS--QR-----WTSTTTTSGKHASPQVTTPPPRH 65
            |.|.....|.:||.......:..|:|.:.:.:.  ||     ..|.|.:..|::.|         
  Rat    34 GTRAASDTRAQIPYFSLLKILTSASPNMHSISQFHQRTPAMCCCSQTQSGEKYSDP--------- 89

  Fly    66 DWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSAHPLMKTAKHLLYNGKNTMQAW 130
                          :...:..|:.|..|        :||.:..:...:|......::||.  :|:
  Rat    90 --------------FKLGWRDLKGLYED--------IRKELHISTRELKDMSEYYFDGKG--KAF 130

  Fly   131 -GLIVLLVSKAAGHAPSVPDVEQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQD 194
             .:||:|:::|.       ::..:.|..:...||::|.|.|||..:.|||:.|::..||.:....
  Rat   131 RPIIVVLMARAC-------NIHHNNSREMQARQRSVALVAEMIHTATLVHDDVIDDASSRRGKHT 188

  Fly   195 VDTYDDMSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEF--IGERDEQNNP 257
            |:..    :|.:..:|.||.:|..:|..||.:.|..||.|::..:.|....||  :|.::.:|..
  Rat   189 VNKV----WGEQKAVLAGDLILSAASIALARIGNTAVVSLLAQVIEDLVRGEFLQLGSKENENER 249

  Fly   258 LP-YKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWECRNILNAGSLLGKSCQASLKLA 321
            .. |...||::                                      ..||:..||:|...|.
  Rat   250 FAHYLEKTFKK--------------------------------------TASLIANSCKAVSVLG 276

  Fly   322 GQSEELQRHAYRFGKHLALAWQACLDAEPF-QCPQ-----LPLDVTFSLVSAPVLFHLEHDPGMY 380
            .....:...||::||::.:|:|...|...| .|..     ...|:...:.:.||||..:..|.|.
  Rat   277 CPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMN 341

  Fly   381 SQLEAGKQSVDNIDYDKIHKAILAGPALAKTKELQRKHTAAALAVLQHFPATDARQAL 438
            :.: ..:.|:.. |.|:..:.:|....:.:|..|.:::...|:..::....:..|.||
  Rat   342 AMI-MRRFSLPG-DVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERDAL 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdss2NP_649277.1 Isoprenoid_Biosyn_C1 86..441 CDD:469660 80/363 (22%)
Pdss1NP_001387776.1 PLN02890 84..409 CDD:178478 82/398 (21%)

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