DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdss2 and Pdss1

DIOPT Version :9

Sequence 1:NP_001287138.1 Gene:Pdss2 / 40323 FlyBaseID:FBgn0037044 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_003751782.2 Gene:Pdss1 / 100364990 RGDID:2319976 Length:500 Species:Rattus norvegicus


Alignment Length:448 Identity:93/448 - (20%)
Similarity:174/448 - (38%) Gaps:101/448 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GLRIMQQMRRRIPVELQPLQVAKAAPALQTFTS--QR-----WTSTTTTSGKHASPQVTTPPPRH 65
            |.|.....|.:||.......:..|:|.:.:.:.  ||     ..|.|.:..|::.|         
  Rat   125 GTRAASDTRAQIPYFSLLKILTSASPNMHSISQFHQRTPAMCCCSQTQSGEKYSDP--------- 180

  Fly    66 DWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVALHLRKLVGSAHPLMKTAKHLLYNGKNTMQAW 130
                          :...:..|:.|..|        :||.:..:...:|......::||.  :|:
  Rat   181 --------------FKLGWRDLKGLYED--------IRKELHISTRELKDMSEYYFDGKG--KAF 221

  Fly   131 -GLIVLLVSKAAGHAPSVPDVEQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQD 194
             .:||:|:::|.       ::..:.|..:...||::|.|.|||..:.|||:.|::..||.:....
  Rat   222 RPIIVVLMARAC-------NIHHNNSREMQARQRSVALVAEMIHTATLVHDDVIDDASSRRGKHT 279

  Fly   195 VDTYDDMSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEF--IGERDEQNNP 257
            |:..    :|.:..:|.||.:|..:|..||.:.|..||.|::..:.|....||  :|.::.:|..
  Rat   280 VNKV----WGEQKAVLAGDLILSAASIALARIGNTAVVSLLAQVIEDLVRGEFLQLGSKENENER 340

  Fly   258 LP-YKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWECRNILNAGSLLGKSCQASLKLA 321
            .. |...||::                                      ..||:..||:|...|.
  Rat   341 FAHYLEKTFKK--------------------------------------TASLIANSCKAVSVLG 367

  Fly   322 GQSEELQRHAYRFGKHLALAWQACLDAEPF-QCPQ-----LPLDVTFSLVSAPVLFHLEHDPGMY 380
            .....:...||::||::.:|:|...|...| .|..     ...|:...:.:.||||..:..|.|.
  Rat   368 CPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMN 432

  Fly   381 SQLEAGKQSVDNIDYDKIHKAILAGPALAKTKELQRKHTAAALAVLQHFPATDARQAL 438
            :.: ..:.|:.. |.|:..:.:|....:.:|..|.:::...|:..::....:..|.||
  Rat   433 AMI-MRRFSLPG-DVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERDAL 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdss2NP_001287138.1 Isoprenoid_Biosyn_C1 86..441 CDD:294142 80/363 (22%)
Pdss1XP_003751782.2 PLN02890 74..500 CDD:178478 93/448 (21%)
Isoprenoid_Biosyn_C1 191..498 CDD:294142 79/359 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0142
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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