DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sems and LOC312273

DIOPT Version :9

Sequence 1:NP_649270.1 Gene:Sems / 40315 FlyBaseID:FBgn0037036 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_001101326.1 Gene:LOC312273 / 312273 RGDID:1563848 Length:246 Species:Rattus norvegicus


Alignment Length:239 Identity:77/239 - (32%)
Similarity:116/239 - (48%) Gaps:55/239 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RVIGG----------RVTTNAKLGGYLVAMRYFNNFICGGTLIHELIVLTAAHCFEDR-----AE 92
            |::||          :|:.||            .:.||||:||.:..||:||||:..:     .|
  Rat    24 RIVGGYTCQEHSVPYQVSLNA------------GSHICGGSLITDQWVLSAAHCYHPQLQVRLGE 76

  Fly    93 KEAWSVDGGISRLSEKGIRRQVKRFIKSAQFKMV--------TMNMDVAVVLLNRP-MVGKNIGT 148
            ...:.::|             .::||.:|  ||:        |::.|:.::.|..| .:...:.|
  Rat    77 HNIYEIEG-------------AEQFIDAA--KMILHPDYDKWTVDNDIMLIKLKSPATLNSKVST 126

  Fly   149 LSLCSTALTPGQTMDVSGWGMTNPDDEGPGHMLRTVSVPVIEKRICREAYRESVSISDSMFCASV 213
            :.|.....|.|....|||||:.....|.|. :|:.:..||:...:|.:||..  .|:::|||...
  Rat   127 IPLPQYCPTAGTECLVSGWGVLKFGFESPS-VLQCLDAPVLSDSVCHKAYPR--QITNNMFCLGF 188

  Fly   214 L-GKKDACTYDSGGPLVYEKQVCGIVSFGIGCASRRYPGVYTDV 256
            | |.||:|.||||||:|...:|.||||:|.|||....|||||.|
  Rat   189 LEGGKDSCQYDSGGPVVCNGEVQGIVSWGDGCALEGKPGVYTKV 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SemsNP_649270.1 Tryp_SPc 43..263 CDD:214473 77/239 (32%)
Tryp_SPc 44..265 CDD:238113 76/238 (32%)
LOC312273NP_001101326.1 Tryp_SPc 25..242 CDD:238113 76/238 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBP0
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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