DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sems and svh-1

DIOPT Version :9

Sequence 1:NP_649270.1 Gene:Sems / 40315 FlyBaseID:FBgn0037036 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:251 Identity:68/251 - (27%)
Similarity:118/251 - (47%) Gaps:36/251 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RVIGGRVTTNAKLGGYLVAMRYFNNFI----CGGTLIHELIVLTAAHCFEDRAEKEAWSVDGGIS 103
            ||:||..|..... .:..|:|  |...    ||.:::.:..::|||||||:.....::.|..|..
 Worm   712 RVVGGFETVPGAF-PWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDW 773

  Fly   104 RLSEKGIRRQVKRFIKSAQFKMVTMNM---DVAVVLLNRPMVGKNIGTLSLC----STALTPGQT 161
            ..::.....|: .:::...|..:..::   |:|::.:..|.:..|.....:|    ....|||:.
 Worm   774 DNNQTDGNEQI-FYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQ 837

  Fly   162 MDVSGWGMTNPDDEGPG----HMLRTVSVPVIEKRICREAYRESVSISDSMFCASVL-GKKDACT 221
            ..|||||       ..|    ..|:...:|:|.:..|..:.:...|:|.|.|||..| |..|:|.
 Worm   838 CVVSGWG-------SMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQ 895

  Fly   222 YDSGGPLVYEKQ-----VCGIVSFGIGCASRRYPGVYTDVHYVKPFIVKGIKALLS 272
            .|||||....::     :.|::|:|.|||.::.||:||   .|.|:: ..|.|:::
 Worm   896 GDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYT---MVAPYL-SWISAIIN 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SemsNP_649270.1 Tryp_SPc 43..263 CDD:214473 66/240 (28%)
Tryp_SPc 44..265 CDD:238113 65/241 (27%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SRCR_2 599..681 CDD:382996
Tryp_SPc 713..945 CDD:238113 66/246 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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