DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32432 and lrp1bb

DIOPT Version :9

Sequence 1:NP_649266.1 Gene:CG32432 / 40310 FlyBaseID:FBgn0052432 Length:1307 Species:Drosophila melanogaster
Sequence 2:XP_021334671.1 Gene:lrp1bb / 559293 ZFINID:ZDB-GENE-070912-401 Length:4600 Species:Danio rerio


Alignment Length:1122 Identity:206/1122 - (18%)
Similarity:337/1122 - (30%) Gaps:366/1122 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 CSLAEFSCSNGR-CVPLSKYCNNLNDCGDGSDEPRFC----TRCNRTYYGDIGQTYALELHRPKQ 273
            |.|....|...| |:..:|.||...||.||.||...|    :.|:             |||    
Zfish    40 CPLNHIQCVGSRKCIHFNKLCNGAKDCEDGFDEGVHCRELLSACH-------------ELH---- 87

  Fly   274 DRVPFVCVLT------FTAAG----------------GQHGDVVQVTLDSFTIGRFTSYVHEGCP 316
              ..:.|::|      |.|.|                ..:|...|..::  |.|.|..    .|.
Zfish    88 --CRYGCIMTRNGTFCFCADGFEVGEDGRSCRDHDECAMYGTCSQTCMN--TYGSFRC----SCT 144

  Fly   317 DGYMQIAESARTPIGGMWCGSSWGPVLFYSETRSLIFTIRLNRLAR----DQSG-YNFDFRIRYK 376
            ||: .:..:.|:.|.....|.|...:|.......:|..:..:||..    |.:| :..||..:.:
Zfish   145 DGF-SLQPNRRSCIAKHEPGESPAALLIGGSDNIIITALNGSRLQTLKQLDSNGTHGLDFNHKEE 208

  Fly   377 ----VLSRDSSVTRYGGIKLAELAQWHNRSSFLNQQQQQQQQQQQQQQQQQGAPGILEDFTNSSV 437
                |.|.:||    |.::.|.:.:   .|.|..:|:.:..|......|      :..|:...:.
Zfish   209 SVCWVTSSESS----GQLRCARMKK---ASGFTKEQEVKTVQNLHDVDQ------LTFDWLTGNF 260

  Fly   438 ARSDRYGQDFSLFSAYANNKTFMASL--EKSLAKDEQNYTEPKYYLGDLIPGTYCSRIFSDCDKK 500
                       .|...|:::.|:.:.  :..:...:.:...||....|.:.|..   .|:|.. .
Zfish   261 -----------YFVDQASDRIFVCNQLGDTCVTVVDLDLLNPKAIALDPLMGML---FFTDYG-N 310

  Fly   501 PCRLQSPNFPGIYPRNLTCYYAVRQHDVPHGKHALILVKQPKGNLVWISTQETAAANKMAPPPSA 565
            ..:|:..|..|.....|..|...|...|     ||.|||                          
Zfish   311 VAKLERCNMDGTNRTRLVDYKVERPTAV-----ALDLVK-------------------------- 344

  Fly   566 SDKDKKFEPRLKTW--NYCDYIQENVKPKWKSTDYVTVYDGYTTRDPIILKFCGGGQAVPAAVSS 628
                     :|..|  .|.|||:        ..||                              
Zfish   345 ---------KLVYWADAYLDYIE--------MVDY------------------------------ 362

  Fly   629 GPELLVEFSTSPFGTFTGTSSQVLPLYGFQLEVEVQFVDIQSPTYSKNKKPCEFWIRGAGRGILE 693
                            .|.:...: :.|:|:.                                 
Zfish   363 ----------------NGKNRHTI-MQGYQVA--------------------------------- 377

  Fly   694 SPKHSLAPNSTCLYHLQGLGVFKTFDHLSLSRRTSSQSGMHQPLSRFKVWISVLKFNLDPEFGQI 758
                          ||.||.||:  |:|..:|..:|...:          :.:|:.|   .|...
Zfish   378 --------------HLHGLAVFE--DYLYATRSEASSGTV----------VDILRIN---RFNVT 413

  Fly   759 DETSVGAIGVLQTQEDCSGMLRIWDGTLRDAPVCKDLNCATETSSYNTLGHYTH---NSTSVIAR 820
            |...:.:||..:|       :|::....:  |..|...|  |..||...|..:|   .|.|..:|
Zfish   414 DPEMLTSIGNAKT-------IRVYHKLCQ--PKVKGHAC--EVDSYGKPGGCSHICLLSGSYKSR 467

  Fly   821 FCR-------GTIPRTCDRSNINETY-----ARPCTIS--ESYVSTSDAITLELRNTESTVLRPL 871
            .||       |...::|.:.. |:.:     .||..|.  :..|.:||...:.:.:..:.  |.|
Zfish   468 SCRCRTGFRLGNDGQSCKKPK-NDLFLFYGKGRPGIIRGLDMNVKSSDEHMVPIEDLVNP--RAL 529

  Fly   872 DFKLK---YEFIDLHQ--------DGLPWGGGEHDCNRK-FLSSMMDRKDPAIFRSVRNIFLFGR 924
            |:..:   ..|.|...        ||         .||: .|...:|..:......:.|...:..
Zfish   530 DYHAETGNIYFADTTSFLIGRQKVDG---------SNRETILKDDLDNVEGISVDWIGNNLYWTN 585

  Fly   925 GGTRNLKCIYKFEAQRGERVRIKMRKVTTTNRPCYSR--VDEDINRSFCYGDTNVRIEIFERPYH 987
            .|.|....:.:.|...      :.||........:.|  |.:.:|....:.|..      |...:
Zfish   586 DGYRKTISVARLERAS------ETRKTLLEGDMSHPRAIVVDPLNSWMYWTDWE------EDEVN 638

  Fly   988 DSILLHRGCMCNSSNQSHLPVEYTSTSRDVEVHFIAQNM-----TTLDDPDTVNF--EGMFEFVK 1045
            |||........:.||:.               .|:..||     .|||...:..:  :..::.::
Zfish   639 DSIGRIEKAWMDGSNRK---------------IFVTSNMLWPNGLTLDHGTSTMYWCDAYYDHIE 688

  Fly  1046 APTSCKDGRRKFGPSGTIDMTFGDVECRSRPWLIEPSNGNKFLYVRLKA---IFLSKHNPTQTLN 1107
            .......||........::..||..:.::..:..|..|.:.|....|.|   :..|:..|...|.
Zfish   689 KIYLNGTGRMVVYSGRELNHPFGIAQYQNSIFWTEYMNASIFQLDLLSAEVSLLRSERPPLFGLR 753

  Fly  1108 ATYVQT---------DTWRCETKSRAVLTTSEGLTIVACPLSPDSNAYEFVEIFSSGWNE----R 1159
            ....|:         :...|.|...||    .|..:.||..:...:.:......|:|..|    |
Zfish   754 VYDAQSQLGDNPCRVNYGGCGTLCLAV----PGGRVCACADNQHLDKHNLTCSDSAGQEEPQRCR 814

  Fly  1160 PNFALVNRSRAISVEFLRPGNGEYSFNWMELIPRPTLSMAEDC---QFKCAELGACVNASVWCDG 1221
            .:.......|.|.|.::..|:.:......|   .|.:.....|   ||||.. ..|:.....|||
Zfish   815 SDEFQCRNGRCIRVNWICDGDDDCLDGSDE---EPHICSNHSCPIDQFKCPS-NRCIPKRWLCDG 875

  Fly  1222 VVHCPSGDDETFLQCSA 1238
            ...|...:||:...|||
Zfish   876 ADDCGDNEDESNKTCSA 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32432NP_649266.1 LDLa 214..245 CDD:197566 12/31 (39%)
CUB 503..646 CDD:238001 20/144 (14%)
LDLa 1203..1231 CDD:197566 9/27 (33%)
lrp1bbXP_021334671.1 LDLa 38..76 CDD:294076 14/35 (40%)
FXa_inhibition 128..156 CDD:317114 8/34 (24%)
LY 238..274 CDD:214531 6/52 (12%)
LY 282..324 CDD:214531 9/45 (20%)
LY 326..367 CDD:214531 18/134 (13%)
FXa_inhibition 452..484 CDD:317114 8/31 (26%)
LY 516..558 CDD:214531 7/52 (13%)
LY 559..598 CDD:214531 5/38 (13%)
LY 605..654 CDD:214531 10/54 (19%)
LY 655..697 CDD:214531 6/56 (11%)
FXa_inhibition 766..801 CDD:317114 7/38 (18%)
LDLa 854..887 CDD:238060 12/33 (36%)
LDLa 895..926 CDD:197566
LDLa 939..970 CDD:238060
LDLa 974..1005 CDD:197566
LDLa 1021..1056 CDD:238060
LDLa 1065..1099 CDD:238060
FXa_inhibition 1144..1180 CDD:317114
FXa_inhibition 1192..1220 CDD:317114
LY 1248..1289 CDD:214531
LY 1295..1337 CDD:214531
LY 1339..1382 CDD:214531
LY <1394..1427 CDD:214531
Ldl_recept_b 1586..1625 CDD:278487
LY 1609..1651 CDD:214531
LY 1653..1693 CDD:214531
LY <1703..1734 CDD:214531
FXa_inhibition 1806..1842 CDD:317114
NHL <1858..1941 CDD:302697
NHL repeat 1879..1916 CDD:271320
LY 1915..1955 CDD:214531
Ldl_recept_b 1976..2016 CDD:278487
LY 2001..2041 CDD:214531
FXa_inhibition 2115..2150 CDD:317114
Ldl_recept_b 2298..2339 CDD:278487
LY 2323..2365 CDD:214531
FXa_inhibition 2436..2470 CDD:317114
LDLa 2482..2511 CDD:238060
LDLa 2520..2554 CDD:238060
LDLa 2559..2593 CDD:238060
LDLa <2613..2642 CDD:294076
LDLa 2650..2684 CDD:238060
LDLa 2688..2719 CDD:238060
LDLa 2728..2761 CDD:197566
LDLa 2772..2804 CDD:197566
LDLa 2813..2846 CDD:238060
LDLa 2859..2893 CDD:238060
cEGF 2916..2939 CDD:315355
EGF_CA 2936..2969 CDD:214542
LY 3003..3047 CDD:214531
LY 3050..3086 CDD:214531
LY 3135..3174 CDD:214531
FXa_inhibition 3245..3281 CDD:317114
LDLa 3285..3316 CDD:197566
LDLa 3325..3359 CDD:238060
LDLa 3364..3399 CDD:238060
LDLa 3404..3439 CDD:238060
LDLa 3444..3478 CDD:238060
LDLa 3483..3517 CDD:238060
LDLa 3521..3555 CDD:238060
LDLa 3563..3597 CDD:238060
LDLa 3601..3636 CDD:238060
LDLa 3643..3675 CDD:238060
LDLa 3730..3765 CDD:238060
Ldl_recept_b 4008..4048 CDD:278487
LY 4032..4073 CDD:214531
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.