DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32432 and vldlr

DIOPT Version :10

Sequence 1:NP_649266.1 Gene:CG32432 / 40310 FlyBaseID:FBgn0052432 Length:1307 Species:Drosophila melanogaster
Sequence 2:XP_005155618.1 Gene:vldlr / 393897 ZFINID:ZDB-GENE-040426-803 Length:877 Species:Danio rerio


Alignment Length:460 Identity:88/460 - (19%)
Similarity:142/460 - (30%) Gaps:132/460 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 GSSSTGC-------SLAEFSCSNGRCVPLSKYCNNLNDCGDGSDEPRFCTRCNRTYYGDIGQTYA 265
            |:....|       |..:|.|.:|.|:.:||.||.:.||.|.||||......|.....:.|.:  
Zfish   302 GTDEVNCKNLTQCNSSDQFKCRSGECIEMSKVCNKVRDCPDWSDEPIKECNMNECLINNGGCS-- 364

  Fly   266 LELHRPKQDRVPFVCVLTFTAAGGQHGDVVQVTLDSFTIGRFTSYVHEG---------------- 314
               |..:...:.|.|..|   .|.|       .:|..|.|.....::.|                
Zfish   365 ---HICRDLTIGFECDCT---PGLQ-------LIDRKTCGDVNECLNPGICSQICINLKGGYKCE 416

  Fly   315 CPDGYMQIAESARTPIGGMWCGSSWGPVLFYSETRSLIFTIRLNRLARDQSGYNFDFRIRYKVLS 379
            |.:||..      .|..|:.......|.|.::..|.      :.:|..::..|..........::
Zfish   417 CHNGYQM------DPTTGVCKAVGKEPCLIFTNRRD------IRKLGLERREYTQIVEQLRNTVA 469

  Fly   380 RDSSVTRYGGIKLAELAQWHNRSSFLNQQQQQQQQQQQQQQQQQGAPGILEDFTNSSVARSDRYG 444
            .|:...:. .|..|:|.|   ::.|.....:|.:..::.....|...||..|:...::..||...
Zfish   470 LDADFIQQ-MIFWADLGQ---KAIFSTVLDKQDESHKKVIDDVQMPVGIAVDWIYKNIYWSDLGS 530

  Fly   445 QDFSLFSAYANNKTFM----------------------------ASLEKS--LAKDEQNYTE--- 476
            :..::.:.....|..:                            |.:|||  ...|.|...|   
Zfish   531 KSITVANFNGTKKKVLFNSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGNDRQVLVETDI 595

  Fly   477 --PKYYLGDLIPGTYC---SRIFSDC------DKKPCRLQSPNFPGIYPRNLTCYYAVRQHDVPH 530
              |.....|||.|...   |::...|      |.:...||||::.. :|..||.:          
Zfish   596 QWPNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLA-HPFALTVF---------- 649

  Fly   531 GKHALILVKQPKGNLVWISTQETA--AANKMAPPPSASDKDKKFEP----------RLKTWNYCD 583
                       :..:.|...:..|  .|||..............||          :|...|:|:
Zfish   650 -----------EDRVFWTDGENEAIYGANKFTGSDVTLLASNLNEPQDIIVYHELIQLSGTNWCN 703

  Fly   584 YIQEN 588
            ...||
Zfish   704 EKMEN 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32432NP_649266.1 LDLa 214..245 CDD:197566 14/37 (38%)
CUB 503..646 CDD:238001 19/98 (19%)
LDLa 1203..1231 CDD:197566
vldlrXP_005155618.1 LDLa 29..63 CDD:238060
LDLa 67..99 CDD:197566
Ldl_recept_a 107..145 CDD:395011
Ldl_recept_a 149..184 CDD:395011
Ldl_recept_a 234..269 CDD:395011
Ldl_recept_a 272..308 CDD:395011 1/5 (20%)
LDLa 316..346 CDD:238060 13/29 (45%)
FXa_inhibition 356..390 CDD:464251 8/48 (17%)
EGF_CA 392..426 CDD:214542 4/39 (10%)
LY 457..495 CDD:214531 7/41 (17%)
NHL 479..>570 CDD:302697 13/93 (14%)
LY 504..541 CDD:214531 6/36 (17%)
NHL repeat 511..551 CDD:271320 6/39 (15%)
Ldl_recept_b 564..604 CDD:459654 8/39 (21%)
LY 588..630 CDD:214531 10/41 (24%)
Ldl_recept_b 651..691 CDD:459654 7/39 (18%)
FXa_inhibition 708..745 CDD:464251 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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