DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32432 and Lrp12

DIOPT Version :9

Sequence 1:NP_649266.1 Gene:CG32432 / 40310 FlyBaseID:FBgn0052432 Length:1307 Species:Drosophila melanogaster
Sequence 2:XP_006520965.1 Gene:Lrp12 / 239393 MGIID:2443132 Length:859 Species:Mus musculus


Alignment Length:986 Identity:179/986 - (18%)
Similarity:290/986 - (29%) Gaps:387/986 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 LGDLIPGTYCSRIFSDCDKKPCRLQ-------SPNFPGIYPRNLTCYYAVRQH------------ 526
            |.:|....:.|.:.:.|.:.|.:::       ||.:|..||..:.|.:.:|.:            
Mouse    31 LAELSENVHISGVSTACGESPEQIRAPSGIITSPGWPSDYPAQVNCSWLIRANPGEIITISFQDF 95

  Fly   527 DVPHGKHALILVKQPKGNLVWISTQET-------AAANKMAPPPSASDKDKKFEPRLKTWNYCDY 584
            |:...:..         .|.|: |.||       .|.....|||..|.                 
Mouse    96 DIQGSRRC---------TLDWL-TIETYKNIESYRACGSTIPPPYISS----------------- 133

  Fly   585 IQENVKPKWKSTDYVT-------VYDGYTTRDPIIL--KF-CGGGQAVPAA----------VSSG 629
             |::|..::.|.|.|:       .:....:..|...  :| ||.|:.:|.|          .||.
Mouse   134 -QDHVWIRFHSDDSVSRKGFRLAYFSAGKSEQPDCACDQFRCGNGKCIPEAWKCNSMDECGDSSD 197

  Fly   630 PELLVEFSTSPFGTFTGTSSQVLPLYGFQ---------------LEVEVQF--------VDIQSP 671
            .|:....:..|    |.|:.|......||               |:.:...        :|...|
Mouse   198 EEVCASDAHPP----TTTAFQPCAYNQFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDMP 258

  Fly   672 TYSKNKKPCEFWIRGAGRGILESPKHS--LAPNSTCLYHLQGLGVFKTFDHLSLSRRTSSQSGMH 734
            |       |..|:: ...|...||.:.  ..|.|.|.:      :..|.||..:           
Mouse   259 T-------CGQWLK-YFYGTFNSPNYPDFYPPGSNCTW------LIDTGDHRKV----------- 298

  Fly   735 QPLSRFKVWISVLKFNLDPEFGQIDETSVGAIGVLQTQEDCSGMLRIWDGTLRDAPVCKDLNCAT 799
                       :|:|.   :| ::|.|..|            ..::|:|| |.:.| .|.|...|
Mouse   299 -----------ILRFT---DF-KLDGTGYG------------DYVKIYDG-LEENP-RKLLRVLT 334

  Fly   800 ETSSYNTLG----------HYT---------HNSTSVIARFCRG------------TIPRTCD-- 831
            ...|:..|.          |:.         .|:|..:..||..            |..:.||  
Mouse   335 AFDSHAPLTVVSSSGQIRVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGY 399

  Fly   832 ------RSNINETYARPCTISESYVSTSDAITLELRNTESTVLRPLDFKLKYEFIDLHQDGLPWG 890
                  |..||      ||:.:..         |...:.:.|..|...:..|      |:..|.|
Mouse   400 WHCPNGRDEIN------CTMCQKE---------EFPCSRNGVCYPRSDRCNY------QNHCPNG 443

  Fly   891 GGEHDC------------NR-KFLSSMMDRKD---------------------PAIFRSV--RNI 919
            ..|.:|            || .|.|.:.|.:|                     .|:..|:  ..:
Mouse   444 SDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVPTRVITAAVIGSLICGLL 508

  Fly   920 FLFGRGGTRNLKCIYKFEAQRGER--VRIKMRKVTTTNRPCYSRV--------DEDI-----NRS 969
            .:...|.|..|..:..||.:..|.  .|::...:.....|.|.::        .||.     |::
Mouse   509 LVIALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPPVEDFPVCSPNQA 573

  Fly   970 FC-----------YGDTNVRI-------EIFERPYHDSILLHRGCMCNSSNQSHLPVEYTSTSRD 1016
            ..           .|.|::|:       .|:.|.::.:...|.|.:...|......|...|:||:
Mouse   574 SVLENLRLAVRSQLGFTSIRLPMTGRSSNIWNRIFNFARSRHSGSLALVSGDGDEVVPSQSSSRE 638

  Fly  1017 VEVHFIAQNMTTL--DDPDTVN----FEGMFEFVKAPTSCKDGRRKFGPSGTIDMTFGDVECRSR 1075
            .|.....:::.::  ||.||.|    ..|....|.||..     :|..|:..::.|.|       
Mouse   639 TERSRPHRSLFSVESDDTDTENERRDTAGASGGVAAPLP-----QKVPPTTAVEATVG------- 691

  Fly  1076 PWLIEPSNGN--------------KFLYVRLKAIFLSKHNPTQTLNATYVQTDTWRCETKSRAVL 1126
                  |.||              :...|...::..::|..|..|:                   
Mouse   692 ------SGGNSSAQSTRGGHADGREVSSVEAPSVSPARHQLTSALS------------------- 731

  Fly  1127 TTSEGLTIVACPLSPDSNAYEFVEIFSSGWNERP----NFALVNRSRAISVEFLRP---GNGEYS 1184
            ..::||..|...|...|         |:..|..|    :.|:..|.....||.|.|   |..:..
Mouse   732 RMTQGLRWVRFTLGRSS---------STTQNRSPLRQLDTAVSGREDDDDVEMLIPVSDGASDID 787

  Fly  1185 FNWMELIPRPTLSMAED------------------------CQFKCAELGACVNASVWCDGVVHC 1225
            .|...   ||.|.:|.|                        |: :|..:..........:..|..
Mouse   788 ANDCS---RPLLDLASDQVQGFRQPHSAGNPGVRTSNRDGPCE-RCGIVHTAQIPDTCLEATVKT 848

  Fly  1226 PSGDDETFLQC 1236
            .:.|||..|.|
Mouse   849 ETSDDEALLLC 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32432NP_649266.1 LDLa 214..245 CDD:197566
CUB 503..646 CDD:238001 34/188 (18%)
LDLa 1203..1231 CDD:197566 3/27 (11%)
Lrp12XP_006520965.1 CUB 47..156 CDD:366096 25/136 (18%)
LDLa 167..201 CDD:238060 9/33 (27%)
LDLa 216..255 CDD:238060 3/38 (8%)
CUB 268..372 CDD:238001 28/149 (19%)
LDLa 376..411 CDD:238060 7/40 (18%)
LDLa 414..449 CDD:238060 8/49 (16%)
LDLa 452..486 CDD:238060 6/33 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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