DRSC/TRiP Functional Genomics Resources

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Protein Alignment Six4 and Rhox4c

DIOPT Version :10

Sequence 1:NP_649256.1 Gene:Six4 / 40297 FlyBaseID:FBgn0027364 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_001034778.1 Gene:Rhox4c / 434759 MGIID:3613386 Length:205 Species:Mus musculus


Alignment Length:112 Identity:30/112 - (26%)
Similarity:54/112 - (48%) Gaps:10/112 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 KEAEKVRGRPLGAVDKYRLRKKYPL--------PKTIWDGEETV-YCFKEKSRNALKDCYLTNRY 320
            :|.||:...|: ..|...:.|..|:        ||::|..:.:: |.|:......|:..:..|.:
Mouse    89 QEEEKLPEEPV-LKDAVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQLQELERIFQQNHF 152

  Fly   321 PTPDEKKTLAKKTGLTLTQVSNWFKNRRQRDRTPQQRPDIMSVLPVG 367
            ...:|::.||:..|::.|:|..|||.||:..|..|.:..:....|||
Mouse   153 IRAEERRHLARWIGVSETRVKRWFKKRREHFRRGQSQLGMNDDAPVG 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Six4NP_649256.1 SIX1_SD 181..290 CDD:465293 7/32 (22%)
homeodomain 301..355 CDD:238039 16/53 (30%)
Rhox4cNP_001034778.1 homeodomain 129..187 CDD:238039 16/57 (28%)

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