DRSC/TRiP Functional Genomics Resources

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Protein Alignment Six4 and six6a

DIOPT Version :9

Sequence 1:NP_649256.1 Gene:Six4 / 40297 FlyBaseID:FBgn0027364 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_957399.1 Gene:six6a / 394080 ZFINID:ZDB-GENE-040426-1282 Length:245 Species:Danio rerio


Alignment Length:179 Identity:105/179 - (58%)
Similarity:136/179 - (75%) Gaps:4/179 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 MLQFSTDQIQCMCEALQQKGDIEKLTTFLCSLP--PS--EFFKTNESVLRARAMVAYNLGQFHEL 238
            :|.||..|:..:||.|::.||:|:|..||.|||  ||  :....|||||||||:||::.|.|.||
Zfish     6 ILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPSACDVLGKNESVLRARAVVAFHAGNFREL 70

  Fly   239 YNLLETHCFSIKYHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETVYCF 303
            |::||.|.|:...|..||.||.:|||:||||:||||||.|||||:|||:|||:||||||:..:||
Zfish    71 YHILENHKFTKDSHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCF 135

  Fly   304 KEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQRDR 352
            ||::|:.|::.||.:.||.|.:|:.||:.||||.|||.|||||||||||
Zfish   136 KERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDR 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Six4NP_649256.1 SIX1_SD 181..290 CDD:293483 64/112 (57%)
homeodomain 301..355 CDD:238039 32/52 (62%)
six6aNP_957399.1 SIX1_SD 9..122 CDD:293483 64/112 (57%)
homeodomain 130..178 CDD:238039 24/47 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0775
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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