DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Six4 and six4

DIOPT Version :9

Sequence 1:NP_649256.1 Gene:Six4 / 40297 FlyBaseID:FBgn0027364 Length:392 Species:Drosophila melanogaster
Sequence 2:XP_002933781.2 Gene:six4 / 100498150 XenbaseID:XB-GENE-481699 Length:817 Species:Xenopus tropicalis


Alignment Length:361 Identity:153/361 - (42%)
Similarity:197/361 - (54%) Gaps:83/361 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GNLSCKTV--------LQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNS 113
            |..||..|        ||.:     .|:||.:         .|:...:||              |
 Frog    13 GVCSCVVVTLGTEAIRLQFE-----GGLEKKN---------NNNAHNNPP--------------S 49

  Fly   114 IIFE-NGSSGNL-GDL-NGNTKTDLCAGLQR----SGGGLGG-------NAGSGGHLISNLTAAH 164
            |.:: ..::||| |.: .|.|......|.|:    :..|:|.       ||...|.  |.:.|  
 Frog    50 IYYDFCAAAGNLIGSIEKGRTLFLKKRGEQKMSSPTSNGIGNAIEIKQENALESGE--SEVAA-- 110

  Fly   165 NMSAVSSFPIDAK-----------------------MLQFSTDQIQCMCEALQQKGDIEKLTTFL 206
            .:||:...|...:                       .|.||.:.:.|:||||||.||:::|:.||
 Frog   111 ELSALEPAPFSMEHAGQVETESGIKNELLPGGGAPYTLAFSPEHVACVCEALQQGGDLDRLSRFL 175

  Fly   207 CSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIKYHVDLQNLWFKAHYKEAEKVR 271
            ||||.||..:.|||:|:|||:|.::.|::.||:.|||:|.|....|..||.||:||.|.||||.|
 Frog   176 CSLPHSELLRGNESILKARALVTFHQGRYSELFLLLESHNFHPSNHAALQELWYKARYIEAEKAR 240

  Fly   272 GRPLGAVDKYRLRKKYPLPKTIWDGEETVYCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLT 336
            |||||||||||||:|:|||:|||||||||||||||||||||:.|..||||:|..|:.|||.|||:
 Frog   241 GRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKHNRYPSPAAKRNLAKVTGLS 305

  Fly   337 LTQVSNWFKNRRQRDRTPQQRPDIMSVLPVGQLDGN 372
            ||||||||||||||||.|.:...      ..:.|||
 Frog   306 LTQVSNWFKNRRQRDRNPSEAQS------KSESDGN 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Six4NP_649256.1 SIX1_SD 181..290 CDD:293483 64/108 (59%)
homeodomain 301..355 CDD:238039 41/53 (77%)
six4XP_002933781.2 SIX1_SD 150..259 CDD:374862 64/108 (59%)
homeodomain 270..324 CDD:238039 41/53 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 87 1.000 Domainoid score I7898
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3257
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

Return to query results.
Submit another query.