DRSC/TRiP Functional Genomics Resources

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Protein Alignment lhcgr and Lgr4

DIOPT Version :10

Sequence 1:NP_991188.1 Gene:lhcgr / 402920 ZFINID:ZDB-GENE-040806-3 Length:708 Species:Danio rerio
Sequence 2:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster


Alignment Length:715 Identity:163/715 - (22%)
Similarity:274/715 - (38%) Gaps:160/715 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    19 GVC------FECPEICR-----CSQKSITCNSATGSQKSLSRLVLNYISVKTISSRSFDGLKGVR 72
            |.|      |.||  ||     |..:.:|.......|..|:.|.|...:.:||....|..|..|.
  Fly   151 GECLWPNENFSCP--CRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHETFFSELPDVD 213

Zfish    73 RIEIAQSSSVETIESEAF---------------NNLPNVSE----------ISIQNTRNLVHIQQ 112
            .: :.:..|:..|.|.||               |.||::.|          |.|....:|.|:::
  Fly   214 SL-VLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLHHLKR 277

Zfish   113 RAFNQLPKLRYLSISNTGISVF--------PDLTSIFSLEAHFILDICDNLNLRSVPSNAFTGMT 169
            ..|..|.||:.|.:....|..|        |:|..::..|.|          |:.:..:.|....
  Fly   278 SDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENH----------LKRLDPDRFPRTL 332

Zfish   170 SEYATMNLFNNGFQEIESHAFNGTKIDKLVLKNSRDLRVVHEDAFKGALGPTVLDVSSTALETLP 234
            ....|::|..|..::|.::.|...::..|.|..:| |..:.::.|........|.::...:|   
  Fly   333 LNLHTLSLAYNQIEDIAANTFPFPRLRYLFLAGNR-LSHIRDETFCNLSNLQGLHLNENRIE--- 393

Zfish   235 SHGLESVLMLTARSAFALKKLPPLKSLKSLREAQLTFPSHCCALINWDNSRDGSVNSALRNRSSY 299
                          .|.|:....||:|.||                                   
  Fly   394 --------------GFDLEAFACLKNLSSL----------------------------------- 409

Zfish   300 CGDNSSPADLSAISSDDSLESDVIGSSSVEDTFGSIDF-HYPDLDLCQQRQALQ-CSPEADAFNP 362
                     |...:...:|:|.|:.:.:      |:|: ::....||.....:: |.|..|..:.
  Fly   410 ---------LLTGNRFQTLDSRVLKNLT------SLDYIYFSWFHLCSAAMNVRVCDPHGDGISS 459

Zfish   363 CEDIAGFSFLRVAIWFINILAIAGNLVVLLVLFTSRCKLTVPRFL-MCHLAFADLCIGIYLLMIA 426
            ...:.....||.::|.:..:|:.|||:|||..:..:.:..|...| :.|||.:|..:||||.:||
  Fly   460 KLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIA 524

Zfish   427 TVDLRTRGHYSHHAIEWQTGAGCDIAGFLSVFGGELSIYTLSTITVERWHTITHALRLERRLGLS 491
            ..|:..||.|..:...|:....|..|||||.|..:.|...|:.:|.:|..::|..|: .|.....
  Fly   525 CADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLK-PRDTEKV 588

Zfish   492 QASLIMTIGWLLCLAMALLPLI-----GVSSYSKVSMCLPMDIETPLSQAY---VILLLLFNVGA 548
            :..|.:.:.|.:...:|..||:     |...|....:||.:.|..|.::.:   .:|.:|.|..:
  Fly   589 RIVLRLLLLWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLS 653

Zfish   549 FLVICGCYVCIYSAVRN------PEFPGRAADAKIAKRMAVLIFTDFLCMAPISFFAISAAFKVP 607
            .:.|...|:.:..|:|:      ....||  :..:|.|.|:::.||..|..||        ..|.
  Fly   654 LIFILFSYIRMLQAIRDSGGGMRSTHSGR--ENVVATRFAIIVTTDCACWLPI--------IVVK 708

Zfish   608 LITVTNSKI-------LLVLFYPINSCANPFLYAIFTRAFRKDACILLSSMGCCQSKANLYRMKT 665
            |..::..:|       |.||..|:||..||.||.:.|.||::.......::..|....|..|.:|
  Fly   709 LAALSGCEISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQLRRYCHTLPSCSLVNNETRSQT 773

Zfish   666  665
              Fly   774  773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lhcgrNP_991188.1 leucine-rich repeat 47..70 CDD:275380 7/22 (32%)
LRR_5 58..216 CDD:463839 41/190 (22%)
leucine-rich repeat 71..95 CDD:275380 8/38 (21%)
leucine-rich repeat 96..120 CDD:275380 7/33 (21%)
leucine-rich repeat 121..142 CDD:275380 6/28 (21%)
leucine-rich repeat 143..170 CDD:275380 4/26 (15%)
leucine-rich repeat 171..194 CDD:275380 5/22 (23%)
leucine-rich repeat 195..219 CDD:275380 5/23 (22%)
leucine-rich repeat 220..257 CDD:275380 4/36 (11%)
GnHR_trans 283..356 CDD:432511 9/74 (12%)
7tmA_Glyco_hormone_R 370..643 CDD:320264 85/294 (29%)
TM helix 1 371..397 CDD:320264 10/25 (40%)
TM helix 2 404..429 CDD:320264 11/25 (44%)
TM helix 3 449..479 CDD:320264 11/29 (38%)
TM helix 4 491..513 CDD:320264 4/21 (19%)
TM helix 5 533..562 CDD:320264 5/31 (16%)
TM helix 6 572..602 CDD:320264 8/29 (28%)
TM helix 7 612..637 CDD:320264 11/31 (35%)
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011
LRR 167..>430 CDD:443914 60/341 (18%)
leucine-rich repeat 188..211 CDD:275380 7/22 (32%)
leucine-rich repeat 212..235 CDD:275380 6/23 (26%)
leucine-rich repeat 238..261 CDD:275380 4/22 (18%)
leucine-rich repeat 262..285 CDD:275380 6/22 (27%)
leucine-rich repeat 286..309 CDD:275380 4/22 (18%)
leucine-rich repeat 310..334 CDD:275380 5/33 (15%)
leucine-rich repeat 335..357 CDD:275380 5/21 (24%)
leucine-rich repeat 358..381 CDD:275380 5/23 (22%)
leucine-rich repeat 382..405 CDD:275380 5/39 (13%)
leucine-rich repeat 406..427 CDD:275380 7/64 (11%)
7tmA_Relaxin_R 467..752 CDD:320265 85/295 (29%)
TM helix 1 468..494 CDD:320265 10/25 (40%)
TM helix 2 502..527 CDD:320265 11/24 (46%)
TM helix 3 547..577 CDD:320265 11/29 (38%)
TM helix 4 588..610 CDD:320265 4/21 (19%)
TM helix 5 638..667 CDD:320265 5/28 (18%)
TM helix 6 681..711 CDD:320265 12/39 (31%)
TM helix 7 720..745 CDD:320265 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

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