DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pitslre and cdk-9

DIOPT Version :9

Sequence 1:NP_649251.2 Gene:Pitslre / 40292 FlyBaseID:FBgn0016696 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_492906.2 Gene:cdk-9 / 173023 WormBaseID:WBGene00000410 Length:478 Species:Caenorhabditis elegans


Alignment Length:492 Identity:154/492 - (31%)
Similarity:226/492 - (45%) Gaps:81/492 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   469 RSSRSRSRSRSQSS-LEDEVDRQDVGADASPSSSTRSEERGMTQEQPEEKPEEKLKEKQKSLEEQ 532
            :||..|...|..:. .::...|..:|...:||||...:....|..:.|.|  ::|...||..::.
 Worm    12 QSSTQRPPKRPNTEHAQEPPKRALIGGQTTPSSSGGGQTPNGTNYELEVK--QQLSNYQKLFDQA 74

  Fly   533 IPCDDKGIPLPNYYPGVQGCRSVEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEG 597
            .            ||.:   |.|..::.||:|.:||:|.|::|:.|.|..:||||::.||.||||
 Worm    75 T------------YPFI---RDVSTYEKLNKIGQGTFGEVFKARCKNTGRMVALKKILMENEKEG 124

  Fly   598 FPITSLREINTLLKGQHPNIVTVREIV----VGSNMDK----IFIVMDYVEHDLKSLMETMKNRK 654
            ||||:|||:..|.:.:||||..:.|:.    .|:...|    .::||....|||..|:...|.|.
 Worm   125 FPITALREVKMLEQLKHPNITDLIEVCSAKSTGTTGSKDRATFYLVMALCAHDLAGLLSNPKIRM 189

  Fly   655 QSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHKGILKVGDFGLAREY------GSP 713
            ...   .:|.:.:.|:..:..||.:.|||||:|.:|:|:|..||||:.||||||.:      ..|
 Worm   190 SLV---HIKTMMKHLMSGLNKLHRSKILHRDMKAANVLISKDGILKLADFGLARPFVQRENGAGP 251

  Fly   714 IKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCIFAEFLQMLPLFPGKSEIDELNRIFKELG 778
            ...||:.|||||||.|||||....|.|.||||..|||.||.....|:..|.:|..:|..|....|
 Worm   252 RPLYTNRVVTLWYRPPELLLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQGDTEQKQLQLISGLCG 316

  Fly   779 TPNEKIWPGYTELPAVKNMLSQ-NSQFTE--Y---------------------PVSQLRKHFQEK 819
            :.|:.:||....:|....|.|: ||...:  |                     |..:..|.....
 Worm   317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKNLMKFDAPDSKTDPFGKNVKQHDSA 381

  Fly   820 TSEMGLSLLQGLLTYDPKQRLSADAALKHGFFKELPLP----------IDPSMFPTWPAKSELGA 874
            |.:..|.||:.||..||.:|.::|.|....:|.:.|:|          |..|.|.....|.....
 Worm   382 TDDDALHLLEILLAIDPDKRPTSDEAEDDIWFFKDPVPMANVQDLMDTIPNSQFEYTVGKGAHAN 446

  Fly   875 RKAQASSPKPPSGGSQFKQLGRDEPIIVGPGNKLSSG 911
            |....::.:.|:     :|..|       |.|.:.:|
 Worm   447 RGRHQNAQQRPN-----QQQAR-------PSNAIPAG 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PitslreNP_649251.2 STKc_CDC2L1 552..851 CDD:173741 122/336 (36%)
PLN00009 555..854 CDD:177649 122/336 (36%)
cdk-9NP_492906.2 STKc_CDK9 72..413 CDD:270848 124/358 (35%)
S_TKc 85..413 CDD:214567 120/330 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925637at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.