DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13252 and fras1

DIOPT Version :9

Sequence 1:NP_649248.3 Gene:CG13252 / 40289 FlyBaseID:FBgn0037016 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_005165392.1 Gene:fras1 / 563428 ZFINID:ZDB-GENE-060526-68 Length:4003 Species:Danio rerio


Alignment Length:342 Identity:77/342 - (22%)
Similarity:111/342 - (32%) Gaps:129/342 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CLHQMLIIYVLIFVSSATTLDQEPLPDLCQSVKCPPDAEM---------QCPADSSIRHNLLAVD 65
            |:||     ..:|.::.:.     .||.||...|..|..:         ||             |
Zfish    26 CVHQ-----GSLFANNTSW-----KPDTCQDCICYNDIVICKPTRCRNPQC-------------D 67

  Fly    66 LIKSNAVELPN---ASEMASAADGVSYNRGLISDED--------YVQCCLNRKCVC--KTC---- 113
            ..:...:.:|.   ..|..:.:.|:.::.||:...|        .|..|.:.|..|  :.|    
Zfish    68 FPRGERLRIPPNKCCPECFAPSPGICHHEGLVYGHDSQWSNSKCSVCTCAHGKVTCGPRACPPLS 132

  Fly   114 -------YIPD---CPSDADEDV--------------------------------VVVELVP--- 133
                   :|||   ||..|...|                                :|.|..|   
Zfish   133 CGKDQSPFIPDGNCCPVCAHNGVSCSWEGREYRDGLEWTSSPCTKCRCRNGHTECLVAECQPVTC 197

  Fly   134 ---ENNQT-PGECCGTYECQAEPNCTVVRDTDF----HWLK-QCRRCKCESGLKICHKT------ 183
               ||... ||:||.    |.|||..:....::    .|.: .|..|.|:.|...|...      
Zfish   198 KVNENLVVHPGQCCP----QCEPNPCMEAGNEYKHGEQWQRSSCTTCVCDRGHSRCQTEKCPPLH 258

  Fly   184 CD------ERAEGVCQ----SKIS----GMFYKDGENWT-ENCKTCECEKGEPKCTMSFCGNLNC 233
            ||      :||:..|:    ||.|    |:....|:.|. ..|:.|.||:|:..|....|....|
Zfish   259 CDKGQTKVKRADQCCEDCATSKGSCLYEGIVRYHGDMWNGTGCEFCMCERGQVLCQRVECSRSEC 323

  Fly   234 P-SEQQVMLKDTCCPVC 249
            | .|:.|.|...|||.|
Zfish   324 PRGEKLVHLPGKCCPEC 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13252NP_649248.3 VWC 197..249 CDD:302663 19/57 (33%)
fras1XP_005165392.1 VWC 26..85 CDD:278520 14/81 (17%)
VWC 93..150 CDD:278520 13/56 (23%)
VWC 157..214 CDD:278520 9/60 (15%)
VWC 219..276 CDD:278520 11/56 (20%)
VWC 283..340 CDD:278520 18/56 (32%)
VWC 364..414 CDD:302663
FU 419..465 CDD:238021
Furin-like_2 424..512 CDD:292535
FU 461..503 CDD:214589
FU 507..551 CDD:214589
GF_recep_IV 512..669 CDD:291509
FU 555..597 CDD:214589
Furin-like 588..762 CDD:279142
FU 602..645 CDD:214589
FU 648..700 CDD:214589
FU 704..748 CDD:214589
Furin-like 737..911 CDD:279142
FU 754..796 CDD:214589
FU 855..897 CDD:214589
Furin-like 888..1054 CDD:279142
FU 950..994 CDD:214589
FU 1044..1086 CDD:214589
Cadherin_3 <1097..1196 CDD:292802
Cadherin_3 1166..1306 CDD:292802
Cadherin_3 1406..1538 CDD:292802
Cadherin_3 1526..1689 CDD:292802
Cadherin_3 1658..1811 CDD:292802
Cadherin_3 1777..1934 CDD:292802
Cadherin_3 1901..2056 CDD:292802
Cadherin_3 2025..2175 CDD:292802
Cadherin_3 2144..2290 CDD:292802
Cadherin_3 2258..2403 CDD:292802
Cadherin_3 2372..2534 CDD:292802
Calx-beta 2550..2647 CDD:295344
Calx-beta 2672..2771 CDD:295344
Calx-beta 2795..2891 CDD:295344
Calx-beta 2917..3008 CDD:295344
Calx-beta 3036..3130 CDD:295344
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.