DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13252 and Sspo

DIOPT Version :9

Sequence 1:NP_649248.3 Gene:CG13252 / 40289 FlyBaseID:FBgn0037016 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:235 Identity:62/235 - (26%)
Similarity:94/235 - (40%) Gaps:69/235 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PLPDLCQSVKC-PPDAEMQCPADSSIRHNL---LAVDLIKSNAVELPNASEMASAADGVSYNRGL 93
            |...|..|..| ||:|   ||.   .|.:|   |.:.| :..|.|||:.:.:       ::|   
  Rat  4852 PGGQLLHSGTCIPPEA---CPC---TRLSLPWGLTLPL-EEQAQELPSGTVL-------TWN--- 4899

  Fly    94 ISDEDYVQCCLNRKCVCK----TCYIPDCPSDADEDVVVV-ELVP------ENNQTPGECCGTYE 147
                     |.:  |.|:    ||...||......:::.: ||.|      |.|:|         
  Rat  4900 ---------CTH--CTCQGGVFTCSHTDCQECPPGEILQLGELRPCEKTCLEMNKT--------- 4944

  Fly   148 CQAEPNCTVVRDTDFHWLKQCRRCKCESGLKICHK-TCDERAEGVCQSKISGMFYKDGENWTENC 211
             ||..|||..         |...|.|:.|....|. .|  ..|..|:....|..:..|..|.|.|
  Rat  4945 -QAWSNCTEA---------QVPGCVCQLGHFRSHTGLC--VPEDHCECWHHGSPHLPGSEWQEAC 4997

  Fly   212 KTCECEKGEPKCTMSFCGNLNCPSEQQVMLKD--TCCPVC 249
            ::|.|..|:..|| ..|..|:| ::.:|::::  :|||:|
  Rat  4998 ESCRCLHGKSVCT-QHCPELSC-AQGEVVVQEPGSCCPIC 5035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13252NP_649248.3 VWC 197..249 CDD:302663 17/53 (32%)
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521
C8 1206..1276 CDD:285899
TIL 1280..1336 CDD:280072
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:278486
TSP1 1702..1753 CDD:214559
TSP1 1758..1812 CDD:214559
TIL 1822..1873 CDD:280072
TSP1 1917..1970 CDD:214559
FA58C 2070..2226 CDD:214572
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109
FA58C <2111..2225 CDD:238014
LDLa 2236..2270 CDD:238060
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335
LDLa 2392..2426 CDD:238060
LDLa 2449..2483 CDD:238060
TSP1 2490..2538 CDD:214559
TSP1 2543..2595 CDD:214559
TIL 2618..2660 CDD:280072
TSP1 2703..2752 CDD:214559
TSP1 2760..2813 CDD:214559
TSP_1 2819..2867 CDD:278517
TIL 2871..2930 CDD:280072
VWC_out 2932..2979 CDD:214565
TSP1 2972..3023 CDD:214559
TIL 3075..3127 CDD:280072
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:280072
TSP1 3396..3439 CDD:214559
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:280072
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:280072
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:280072
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:280072
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072 7/18 (39%)
TIL 4920..4978 CDD:280072 18/78 (23%)
VWC 4980..5035 CDD:302663 17/56 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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