DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG13252 and Vit

DIOPT Version :9

Sequence 1:	NP_649248.3	Gene:	CG13252 / 40289	FlyBaseID:	FBgn0037016	Length:	384	Species:	Drosophila melanogaster
Sequence 2:	XP_008762649.1	Gene:	Vit / 313831	RGDID:	1564128	Length:	651	Species:	Rattus norvegicus

Alignment Length:	207	Identity:	41/207 - (19%)
Similarity:	72/207 - (34%)	Gaps:	61/207 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   185 DERAEGVCQSKISGM-FYKDG----------ENWTENCKTCECEKGEPKCTMSFCGNLNCPSEQQ 238
            |:....:...|::|. |||..          ..|.|:....|   .:|:..:::...|...|
  Rat    97 DDSGGKILVRKVAGQSFYKGSYSNGVQSLSLPRWRESFVVSE---SKPQKGVTYPSTLTYSS--- 155

  Fly   239 VMLKDTCCPVCWPKCAPMPHEKQDDGSYEDYVDESETP---EEDSLPPLLPDPLTTQQSAELVAT 300
                        ||.|.              .:..||.   |:.|||.....|:|..|:   :||
  Rat   156 ------------PKTAA--------------ANAGETTKAYEKPSLPGTTAQPVTLSQA---LAT 191

  Fly   301 STTTSSNGTTSTTVVPLAATVNCNNAFDQPKVVEVVNQTNYYFYWLVPYSVIASIAIVVMSFYIY 365
            ....:::..||.   |.||:|..::   :|:.|...:|.........|..|:..      |.::.
  Rat   192 PVAEATHRATSK---PFAASVTSSS---RPQPVGHRSQEMEEMATWKPEPVLLD------SGFVP 244

  Fly   366 QQRAKKRSYDPV 377
            ::....:|.:||
  Rat   245 KEELSTQSSEPV 256

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG13252	NP_649248.3	VWC	197..249	CDD:302663	10/62 (16%)
Vit	XP_008762649.1	LCCL	45..134	CDD:281766	8/36 (22%)
		vWA_collagen	265..409	CDD:238749
		vWA_collagen	467..627	CDD:238749
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1216
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900