DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmpy and Ccn1

DIOPT Version :9

Sequence 1:NP_001097652.1 Gene:cmpy / 40288 FlyBaseID:FBgn0037015 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_112617.3 Gene:Ccn1 / 83476 RGDID:620763 Length:379 Species:Rattus norvegicus


Alignment Length:148 Identity:38/148 - (25%)
Similarity:58/148 - (39%) Gaps:41/148 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIRSPDC-PGKGLMLWDPCKCCRI 120
            |.|:..|::|....|....|:           |:| |.|     :|.| ||.||:. |.|.||::
  Rat     9 LAVAVTLLHLTRLALSTCPAA-----------CHC-PLE-----APKCAPGVGLVR-DGCGCCKV 55

  Fly   121 CAKTLGESCGGPGGFSGQCE--PPLQCVTKLPISSGLGVCMDLQHLTALTYSQHDNCSDSDSIV- 182
            |||.|.|.|..    :..|:  ..|:|......::..|:|.        ..|:...|..:..|. 
  Rat    56 CAKQLNEDCSK----TQPCDHTKGLECNFGASSTALKGICR--------AQSEGRPCEYNSRIYQ 108

  Fly   183 ----LEPGCEITNKRCQC 196
                .:|.|:   .:|.|
  Rat   109 NGESFQPNCK---HQCTC 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmpyNP_001097652.1 IGFBP 91..145 CDD:395164 21/56 (38%)
Ccn1NP_112617.3 IGFBP 26..78 CDD:395164 23/73 (32%)
VWC 100..159 CDD:214564 6/27 (22%)
TSP1_CCN 227..270 CDD:408805
Heparin-binding. /evidence=ECO:0000250|UniProtKB:P18406 277..313
Cys_knot 291..373 CDD:394966
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X231
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.