DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cmpy and ccn1

DIOPT Version :9

Sequence 1:NP_001097652.1 Gene:cmpy / 40288 FlyBaseID:FBgn0037015 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_001098984.1 Gene:ccn1 / 448140 XenbaseID:XB-GENE-482634 Length:375 Species:Xenopus tropicalis


Alignment Length:143 Identity:38/143 - (26%)
Similarity:56/143 - (39%) Gaps:28/143 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LLLVMAASGGSNHVVNGLKCYCNPKECDVIRSPDC-PGKGLMLWDPCKCCRICAKTLGESCGGPG 133
            :|.|...||..:..|:.....|   :|.| ..|.| ||.|::| |.|.||::|||.|.|.|..  
 Frog     9 ILAVALLSGIIDLAVSSCPAVC---QCPV-EVPKCAPGVGMVL-DGCGCCKVCAKQLNEDCSK-- 66

  Fly   134 GFSGQCE--PPLQCVTKLPISSGLGVCMDLQHLTALTYSQHDNCSDSDSIV-----LEPGCEITN 191
              :..|:  ..|:|.......:..|:|.        ..|:...|..:..|.     .:|.|:   
 Frog    67 --THPCDHTKGLECNFGASSRAIKGICR--------AKSEGRPCEYNSKIYQNGESFQPNCK--- 118

  Fly   192 KRCQCWPTMRTCL 204
            .:|.|......||
 Frog   119 HQCTCIDGAVGCL 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cmpyNP_001097652.1 IGFBP 91..145 CDD:395164 21/56 (38%)
ccn1NP_001098984.1 IGFBP 26..78 CDD:365955 21/60 (35%)
VWC 100..159 CDD:214564 8/35 (23%)
TSP1 227..267 CDD:214559
GHB_like 289..371 CDD:389804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X231
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.