DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and nr3c1

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_001018547.2 Gene:nr3c1 / 553740 ZFINID:ZDB-GENE-050522-503 Length:746 Species:Danio rerio


Alignment Length:203 Identity:56/203 - (27%)
Similarity:71/203 - (34%) Gaps:73/203 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRS----YNNISTISECKNEGKCIIDKKNRTTCKACR 67
            ::.|.||.:.|:|.|:|..||..||.||.|:    :|.:     |.....|||||..|..|.|||
Zfish   384 HKICLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYL-----CAGRNDCIIDKIRRKNCPACR 443

  Fly    68 LRKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKA-----------PPLAGGVSVGGA 121
            .|||...||    :...|:|            :..|..|||.           |||         
Zfish   444 FRKCLMAGM----NLEARKS------------KSKARQAGKVIQQQSIPERNLPPL--------- 483

  Fly   122 PSASSPVGSPHTPGFGDMAAHLHHHHQQQQQQQVPR--------HPHMPLLGYPSYLSDPSAAL- 177
            |.|.:.|..|                   ..|.||.        .|.....||.|.:.|.|..| 
Zfish   484 PEARALVPKP-------------------MPQLVPTMLSLLKAIEPDTLYAGYDSTIPDTSVRLM 529

  Fly   178 PFFSMMGG 185
            ...:.:||
Zfish   530 TTLNRLGG 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 33/87 (38%)
nr3c1NP_001018547.2 GCR 18..369 CDD:426625
NR_DBD_GR_PR 383..460 CDD:143546 33/96 (34%)
NR_LBD_GR_Like 500..744 CDD:132745 9/38 (24%)
Blue background indicates that the domain is not in the aligned region.

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