DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and esr2

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_001035101.1 Gene:esr2 / 394460 XenbaseID:XB-GENE-486256 Length:548 Species:Xenopus tropicalis


Alignment Length:98 Identity:42/98 - (42%)
Similarity:59/98 - (60%) Gaps:16/98 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CKVCGEPAAGFHFGAFTCEGCKSFFGRS---YNNISTISECKNEGKCIIDKKNRTTCKACRLRKC 71
            |.||.:.|:|:|:|.::|||||:||.||   :|:..    |....:|.|||..|.:|:|||||||
 Frog   167 CAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYI----CPATNQCTIDKNRRKSCQACRLRKC 227

  Fly    72 YNVGMSKGGSR---------YGRRSNWFKIHCL 95
            :.|||.|.|:|         ..||.:..::|||
 Frog   228 FEVGMMKCGTRRERCGYRIVRHRRHSDDQMHCL 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 39/93 (42%)
esr2NP_001035101.1 ERbeta_N 34..142 CDD:463610
NR_DBD_ER 162..243 CDD:143545 37/79 (47%)
NR_LBD_ER 281..517 CDD:132747
Blue background indicates that the domain is not in the aligned region.

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