DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and esr2a

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_851297.1 Gene:esr2a / 317734 ZFINID:ZDB-GENE-030116-2 Length:553 Species:Danio rerio


Alignment Length:159 Identity:51/159 - (32%)
Similarity:72/159 - (45%) Gaps:48/159 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CKVCGEPAAGFHFGAFTCEGCKSFFGRS---YNNISTISECKNEGKCIIDKKNRTTCKACRLRKC 71
            |.||.:.|:|:|:|.::|||||:||.||   :|:..    |....:|.|||..|.:|:|||||||
Zfish   159 CAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYI----CPATNQCTIDKNRRKSCQACRLRKC 219

  Fly    72 YNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAGGVSVGGAPSASSPVGSPHTPGF 136
            |.|||.|.|.|..|.|           ::|..|...:....:|.:.:.|..|             
Zfish   220 YEVGMMKCGLRRDRSS-----------YQQRGAQQKRLVRFSGRMRMTGPRS------------- 260

  Fly   137 GDMAAHLHHHHQQQQQQQVPRHPHMPLLG 165
                         |:.:.:||    ||.|
Zfish   261 -------------QEIKSIPR----PLSG 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 40/84 (48%)
esr2aNP_851297.1 ERbeta_N 28..138 CDD:463610
NR_DBD_ER 154..233 CDD:143545 38/77 (49%)
NR_LBD_ER 280..517 CDD:132747
Blue background indicates that the domain is not in the aligned region.

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