Protein Alignment kni and Hr4

DIOPT Version :10

• Sequence 1: NP_001287130.1
• Gene: kni / 40287
• FlyBaseID: FBgn0001320
• Length: 434
• Species: Drosophila melanogaster
• Sequence 2: NP_001259161.1
• Gene: Hr4 / 31162
• FlyBaseID: FBgn0264562
• Length: 2123
• Species: Drosophila melanogaster
• Alignment Length: 298
• Identity: 79/298 - (26%)
• Similarity: 109/298 - (36%)
• Gaps: 72/298 - (24%)

  Fly    10 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRLRKCYNV 74
            |.:|.:.|.|.|:|..||||||.||.|:..| ..:..|..:|.|.|.|..|..|:.||.:||...
  Fly   921 CMICEDKATGLHYGIITCEGCKGFFKRTVQN-RRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQ 984

  Fly    75 GM---------SKGGSRYGRRSNWFKI----HCLLQEHEQAAAAAGKAPPLAGGVSVGGAPSASS 126
            ||         ..||...|...|.:|:    |....:.:|..||..:.
  Fly   985 GMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKTNQKQQQQAAQQQQ----------------- 1032

  Fly   127 PVGSPHTPGFGDMAAHLHHHHQQQQQQQVPRHP----HMPL-----LGYPSYLSDPSAALPFFSM 182
                       ..||....|.||||.||..:|.    |.||     .|:.|:.:.
  Fly  1033 -----------QQAAAQQQHQQQQQHQQHQQHQQQQLHSPLHHHHHQGHQSHHAQ---------- 1076

  Fly   183 MGGVPHQSPFQLPPHLLFPGYHASAAAAAASAADAAYRQEMYKHRQSV----DSVESQNRF-SPA 242
                ....|...|.|||.|.....|||.||:|.....:|:..:.:|..    ..|:.:..| .||
  Fly  1077 ----QQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQQAKLMGGVVDMKPMFLGPA 1137

  Fly   243 SQPPVVQ--PTSSARQSPIDVCLEEDVHSVHSHQSSAS 278
            .:|.::|  |..|..|.......::.......|.|.:|
  Fly  1138 LKPELLQAPPMHSPAQQQQQQQQQQQQQQASPHLSLSS 1175

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
kni	NP_001287130.1	NR_DBD_like	8..92	CDD:413390	33/90 (37%)
Hr4	NP_001259161.1	NR_DBD_DHR4_like	913..1002	CDD:143542	31/81 (38%)
		NR_LBD_DHR4_like	1256..1515	CDD:132751