DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and Esrra

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_001008511.2 Gene:Esrra / 293701 RGDID:1583866 Length:422 Species:Rattus norvegicus


Alignment Length:147 Identity:47/147 - (31%)
Similarity:69/147 - (46%) Gaps:26/147 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NLMNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRL 68
            :|..:.|.|||:.|:|:|:|..:||.||:||.|:... |....|....:|.|.|:.|..|:|||.
  Rat    73 SLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQG-SIEYSCPASNECEITKRRRKACQACRF 136

  Fly    69 RKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPL-------AGGVSVGGAPSASS 126
            .||..|||.|.|.|..|          ::...|......:..||       ||.::|.|.|..::
  Rat   137 TKCLRVGMLKEGVRLDR----------VRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTA 191

  Fly   127 PVGSPHTPGFGDMAAHL 143
            ||.:        :.:||
  Rat   192 PVNA--------LVSHL 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 34/83 (41%)
EsrraNP_001008511.2 Repressor domain. /evidence=ECO:0000250 1..76 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..66
NR_DBD_ERR 73..168 CDD:143544 36/105 (34%)
NR_LBD_ERR 196..419 CDD:132744 2/5 (40%)
AF-2 domain. /evidence=ECO:0000250 402..422
Blue background indicates that the domain is not in the aligned region.

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